Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00256 ATGGCTGGTGAGCTTTGTGAAGGGGAAGGAAAATCAAACGAGATGGTAGTTGGAGGAGAGTTTTATTACAATTCCAATTCGAATTCAAACAACATCCCTAATCAATTCACAAATCAGATCCAAACCGGGTTCGGTTCCACTACCGAACCTGCTGTGGTGGAGATGTTCAACAACGAGTCGAGTGGTGGTGGCGGCGGCGGTGGCGGTGGTGATGATGATGAGTCGTTTCCCCAAAATATGATGGTGGTTGGACCGTGGGGGACGACGGCTACGACGGATTCTTCTTTAAGATGTGTGTTTCCATGTGAACCAAATGAAAGACCAAGCCAAGGCCTTTCTTTGTCTCTTAGTTCATCTAATCCTTCTTCTATTGGTTTACAATCTTTTGAACTAAGGCAACAACATCAACAACAACAAAACCAATCATCTTTCCCCATTTTTCATCTTAGAAACTCTAAGTTTTTGGCCCCAACTCAAGAACTTCTTTATGAGTTTTGTAGCCTTGGAATCACCAATCATTCTTCTTCTTCACCAAAACACAAACATCCTTCTTCTTCTTCAACCAATTTCTCTCTTCACTCACTTGACTTCATGGAGTTGCAAAAGAGGAAAACCAAGCTTTTTTCCATGCTTGAAGAGGTTGAAAGAAGGTATAGGCATTATTGTGAGCAAATGAAGGCAGTAGTGGCATCGTTCGAAGCAGTAGCGGGGAGTGGGGCGGCGAGGGTGTATTCGGCGTTGGCGTCGAAAGCGATGTCGAGGCATTTTAGGAGCCTAAAAGATGGGATTGTGGGACAAATTCAAGCCACAAGAAAGGCAATGGGAGAAAAGGATCCAATTGCACCTGGTACCACAAGAGGAGAAACCCCAAGACTTAGAGTGATTGATCAAGCTTTAAGGCAACAAAGAGCTTTCCATCAAATCAGCATCATGGAAAGCCATCCATGGCGTCCTCAACGTGGCCTTCCTGAGCGTTCTGTTTCCGTTCTTCGTGCTTGGCTTTTCGAACACTTTCTTCACCCGTACCCTAGCGATGTGGATAAACATATTTTAGCTCGCCAAACTGGTCTCTCCAGAAGCCAGGTGTCAAATTGGTTCATTAATGCAAGGGTGAGGCTGTGGAAGCCAATGGTAGAGGAGATGTATTTGGAAGAAACAAAGGAACAAGAGGAAGAGATTGATAACAGTTTCAACAACAATGCCAATAACTCTTTTGATGGGGTGACGGATTTCAATGACGACATTGACGGTCATCGGTCGATTGCCACAAGACTAGAGGATCAAAAACCGACACCAGACCAACTCTTAAGAATAGACTCGGAATGTCTCTCTTCAATCATCTCTAGCAACTCGGAGAAGAATAATGATCATTCAAGAACAATTAAAACGATGCAAAACCACCACGGACACCAACTCCACGGAAACCACAACCACACCTTCGGACGAGTAGTGGGTGATGCATTTGGCACGGTAGAACTCGACTTCTCGTCCTACAACCACCATACAGGTAGTGGTGGAGTTTCGTACCATAACAGCAGTCACAACAACAACAATCAACATTTCAACAACGGCAGTGGTGGAGGCGTGTCGTTGACTTTAGGGTTACAACAGCATGCCGCGGCCGGGGGGAATGGAAACGGAGGTGTGAGCATTGCCTTCGCTTCAGCAGGACCGGCGGTGGGGCAAAACTCCCTTTTCTTCACAAGAGATCACATGGAAGAATGCCAACCAGTTCAATATTCCCTTTTAGATGGAGAAACTCAGAATCTTCCTTATAGAAATTTGATGGGTGCTCAATTGCTTCATGATTTAGCTGGATAA 1821 45.14 MAGELCEGEGKSNEMVVGGEFYYNSNSNSNNIPNQFTNQIQTGFGSTTEPAVVEMFNNESSGGGGGGGGGDDDESFPQNMMVVGPWGTTATTDSSLRCVFPCEPNERPSQGLSLSLSSSNPSSIGLQSFELRQQHQQQQNQSSFPIFHLRNSKFLAPTQELLYEFCSLGITNHSSSSPKHKHPSSSSTNFSLHSLDFMELQKRKTKLFSMLEEVERRYRHYCEQMKAVVASFEAVAGSGAARVYSALASKAMSRHFRSLKDGIVGQIQATRKAMGEKDPIAPGTTRGETPRLRVIDQALRQQRAFHQISIMESHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYLEETKEQEEEIDNSFNNNANNSFDGVTDFNDDIDGHRSIATRLEDQKPTPDQLLRIDSECLSSIISSNSEKNNDHSRTIKTMQNHHGHQLHGNHNHTFGRVVGDAFGTVELDFSSYNHHTGSGGVSYHNSSHNNNNQHFNNGSGGGVSLTLGLQQHAAAGGNGNGGVSIAFASAGPAVGQNSLFFTRDHMEECQPVQYSLLDGETQNLPYRNLMGAQLLHDLAG* 607
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1549371 1554061 - CsaV3_5G002560.1 Csa05g00256 528643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00256 606 ProSiteProfiles 'Homeobox' domain profile. 313 376 IPR001356 GO:0003677
Csa05g00256 606 PANTHER HOMEOBOX PROTEIN BEL1 HOMOLOG 4 549 - -
Csa05g00256 606 SMART HOX_1 316 380 IPR001356 GO:0003677
Csa05g00256 606 SUPERFAMILY Homeodomain-like 317 383 IPR009057 -
Csa05g00256 606 Gene3D - 319 381 - -
Csa05g00256 606 MobiDBLite consensus disorder prediction 506 525 - -
Csa05g00256 606 SMART prehox3 143 265 IPR006563 -
Csa05g00256 606 Pfam Homeobox KN domain 333 372 IPR008422 GO:0003677|GO:0006355
Csa05g00256 606 Coils Coil 197 217 - -
Csa05g00256 606 CDD homeodomain 316 377 IPR001356 GO:0003677
Csa05g00256 606 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 4 549 - -
Csa05g00256 606 MobiDBLite consensus disorder prediction 56 76 - -
Csa05g00256 606 Pfam Associated with HOX 149 263 IPR006563 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00256 Csa-Chr5:1549371 Csa06g02874 Csa-Chr6:25012164 1.83E-87 dispersed
Csa05g00256 Csa-Chr5:1549371 Csa03g03494 Csa-Chr3:31283814 2.96E-85 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31673 PF07526 POX 6.30E-41 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00256 - - csv:101215049 1055.43