Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00261 ATGTCTTCTGATCTGTTCATTCATGGCGATTCATCATCTTCTTCTTCTCTGTTTCGTTGCTCCTCTTCCGATTTGGTTTTCCCTTCTGAGGCAGACCTTCAATTCTTCTCCGATCCTTATTCCCCTAATTTCTCAGATTCCGCCATTGATATTCTTAATTCCATTCCTTCTCAATCTCAACAAGAAAACCCACTCCTCGATGAATTCAATTCAAATAATAATTCTATTTCCGTCGACAATTTCATCCCGATGCAAGGTTTATCTCTCTCTCATCCCACCCCCGATTTCCCTCTCCTCCCTAATCCATCTCCTTCTTCCTCAAATGGCTTTCAAAATCTCACCAATTTCGACGTCAAAAACGAAGAATCCCTTCTAGGTTTCAACAACCCACCTCTCTGTTTCGACCCCCCTGAAAATGTTGATAAATCCTTACTCCTCCATAGAAGCTTCAGTGAAAAACCCAACTTCCAAACCCGACTCGAAACATTTCTAATGGAATCCCAAAATTTCCCAAATAATCATCACTCTCTCCCTTGCCCTGAATCCGACTTTTTCTCCTCACAAATCAGACGCGTCTTCAGTACCGGCGATTTACAGAATTCGGGGAATGGAAGGTCGTCGTCGTTAATGGAGGAAGGGAATTTCAAAGTGGGAAGATACAGTGCAGAGGAGAGAAAAGAGAGGATATTGAAATACAGAGCAAAGAGAACACAGAGGAATTTCAACAAGACAATAAAGTATGCATGTCGGAAAACGCTAGCCGACAACCGGCCGAGAATACGTGGCAGATTTGCACGCAATGACGAACCTGGAGAGATTCCCAAAGCTGCATGTTCAACCAGGGAAGAAGACGAAGATGATTTCTGGATTGAAGGGTTGCATGGAAGTGAGGAAGAAGGAACAATAAGATCGGGGAAACAGTATGGTGAAATGTACGGACGAATGCAATTTCAGTATTGTGGATTTTGA 969 42.93 MSSDLFIHGDSSSSSSLFRCSSSDLVFPSEADLQFFSDPYSPNFSDSAIDILNSIPSQSQQENPLLDEFNSNNNSISVDNFIPMQGLSLSHPTPDFPLLPNPSPSSSNGFQNLTNFDVKNEESLLGFNNPPLCFDPPENVDKSLLLHRSFSEKPNFQTRLETFLMESQNFPNNHHSLPCPESDFFSSQIRRVFSTGDLQNSGNGRSSSLMEEGNFKVGRYSAEERKERILKYRAKRTQRNFNKTIKYACRKTLADNRPRIRGRFARNDEPGEIPKAACSTREEDEDDFWIEGLHGSEEEGTIRSGKQYGEMYGRMQFQYCGF* 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1587303 1590056 + CsaV3_5G002610.1 Csa05g00261 528648

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00261 322 Pfam CCT motif 225 267 IPR010402 GO:0005515
Csa05g00261 322 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 29 319 IPR045281 GO:0009909
Csa05g00261 322 PANTHER CCT MOTIF FAMILY PROTEIN 29 319 - -
Csa05g00261 322 ProSiteProfiles CCT domain profile. 225 267 IPR010402 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00261 - - - csv:101215766 630.172
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01029 Csa-Chr2:9993133 Csa05g00261 Csa-Chr5:1587303 2.09E-27 dispersed
Csa05g00053 Csa-Chr5:263057 Csa05g00261 Csa-Chr5:1587303 8.54E-21 dispersed
Csa05g00261 Csa-Chr5:1587303 Csa06g01167 Csa-Chr6:9796099 9.40E-23 dispersed
Csa05g00261 Csa-Chr5:1587303 Csa07g01186 Csa-Chr7:11652744 2.38E-24 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g20 . . . . . . . Bma14g00605 . . Cma02g01435 Cma15g01242 Car02g01204 Car15g01119 . . Cpe05g00352 . . . . . . . . . . . . . . Cone8ag0287 Cone12ag0293 Cone6ag0795 . . Csa05g00261 Chy09g01246 . . . . . . Bpe11g00662 . . . Cmo02g01470 Cmo15g01307 . . . . . Cpe13g00143 Bhi12g00289 . . Lac11g2068 Hepe06g1525 . Lcy12g1629 Cla01g00246 Cam01g0250 Cec01g0243 Cco01g0256 Clacu01g0248 Cmu01g0238 Cre09g2270 Lsi09g00236 . . Cme09g01781
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004602 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 5 2 1 1 1 1 1 1 1 1 2 1 1 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31674 PF06203 CCT 9.30E-18 CL0281 Csa TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00261 Csa_Chr05 FPKM 7.219745 7.959759 9.837793 10.947259 8.812883 7.790234 9.61217 12.595451 12.674563 13.196149