Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00262 ATGGGACACGGTGACAAAGGAAGACCCAACAAAAAACCTAAATTCGGCAAGGAGGATTACAAGAAAGCTAATTTTGAAGATGATGATGTCTACCATCTTGATGATCCCGACGACGACGATCGCTATGGTGATAAAGAAGGAGGCAAGAGAGACTTTAGCAAATTGGAGTTAAAACCTGACCATGCTAACCGGCCTTTATGGGCTTGTGCTGATGGTCGTATATTCCTTGAAACTTTTTCGCCCTTGTACAAACAGGCGTATGATTTCCTTATTGCCATTGCGGAACCAGTTTGCAGGCCAGAATCAATGCACGAGTATAACCTCACTCCACATTCTTTGTATGCTGCGGTTTCTGTTGGTCTGGAGACGGAAACAATTATAGCGGTTCTGAGTAAGTTGTCGAAGGCCAAACTCCCTAAGGAGATGATTGATTTCATTTATGCTTCTACTACCAACTATGGCAAGGTGAAGCTTGTCCTTAAAAAGAACCGATATCTTGTGGAATCCCCATTTCCAGAGGTGTTGCAGAAATTGCTCAAGGATGAGGTTATAGGCAGAGCCAGAGTCGTTCATGAGGATTCTGGAAATGGTGAGTTTACAGTTAGCAAAACAGCGGGTGAACTTGGGAGTCGCCATGAAGGATTGCTTAATGAAGCAGAAGCTGCAGCTGCAGCCGAGGAAAGAGAAACTCATTCATTTGAAATTGACCCGTCACAAGTTGAAAATGTTAAACAACGCTGCCTGCCCAATGCCTTAAATTATCCTATGCTGGAAGAGTATGACTTCAGAAATGATACTATCAATCCAGACTTGGATATGGAACTGAAACCACAGGCTCAACCTAGGCCGTATCAGGAAAAGAGTCTTAGTAAAATGTTTGGAAATGGTAGAGCAAGATCTGGCATTATTGTACTTCCTTGTGGAGCTGGGAAGTCTCTGGTTGGAGTTTCTGCAGCCAGTCGTATCCGAAAAAGTTGTTTATGTTTAGCTACAAATGCTGTATCAGTGGATCAGTGGGCTTTTCAGTTTAAGTTGTGGTCTACCATTCGAGATGATCAAATTTGTCGGTTCACATCAGATAGTAAAGAAAGATTCCGAGGAAATGCCGGGGTGGTTGTTACAACTTATAACATGGTTGCTTTTGGTGGTAAAAGATCTGAAGAATCTGAAAAGATTATTGAAGAAATCAGAAACAGAGAGTGGGGACTACTTCTCATGGACGAGGTGCACGTGGTTCCTGCTCACATGTTTCGTAAGGTTATCAGCCTGACTAAGTCTCACTGCAAGCTTGGGCTCACTGCCACACTTGTGAGAGAAGACGAAAGAATTACAGATTTAAACTTTCTTATTGGTCCCAAGTTGTATGAAGCAAACTGGTTGGATCTTGTGAAAGGAGGATTTATTGCAAATGTGCAGTGTGCTGAAGTTTGGTGTCCTATGACAAAGGAGTTTTTTGCTGAATATCTGAAGAAAGAAAACTCAAAGAAAAAACAGGCTCTTTATGTAATGAATCCCAATAAGTTCAGGGCGTGTGAGTTCCTCATACGGTTTCATGAACAGCAGCGTGGTGATAAGATAATTGTTTTTGCTGACAATCTTTTTGCACTTACGGAATATGCAATGAAGCTTCGTAAACCTATGATCTATGGTGCAACAAGTCATATTGAGAGGACAAAAATTCTTGAAGCATTCAAAACTAGTCGTGATGTGAATACCGTTTTTCTTTCAAAGGTGGGTGATAACTCTATCGATATTCCCGAGGCAAATGTGATCATTCAGATTTCATCACATGCGGGTTCAAGGCGTCAAGAAGCCCAGCGTCTGGGGCGTATTCTCAGGGCCAAGGGTAAACATCAGGACAGGATGGCTGGGGGTAAAGAGGAGTATAATGCCTTCTTCTATTCTCTTGTTTCTACGGATACACAGGAAATGTACTATTCAACTAAACGACAACAGTTTTTGATCGATCAAGGTTATAGCTTTAAGGTAATTACAAGCTTGCCACCCGCTGATGCAGGAGCTGAGTTGAGCTATCATCGTCTTGATGATCAGTTGGCACTTCTTGGGAAGGTACTGAATGCAGGCGACGATATGGTAGGATTGGAGCAGTTGGAAGATGATGCAGACCAAATTGCCCTCGATGCAGCTCGCCGTTCAAAGGGATCCATGAGTGCAATGTCAGGAGCAAATGGCATGGTCTACATGGAGTACAGCACTGGACGGAAGCTCGCTGGTCAAGGGCAGCTTAAGAGCAAGCCCAAAGACCCAGCAAAGAGACATCATCTGTTCAAAAAGCGATTTGCGTGA 2307 43.13 MGHGDKGRPNKKPKFGKEDYKKANFEDDDVYHLDDPDDDDRYGDKEGGKRDFSKLELKPDHANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVGLETETIIAVLSKLSKAKLPKEMIDFIYASTTNYGKVKLVLKKNRYLVESPFPEVLQKLLKDEVIGRARVVHEDSGNGEFTVSKTAGELGSRHEGLLNEAEAAAAAEERETHSFEIDPSQVENVKQRCLPNALNYPMLEEYDFRNDTINPDLDMELKPQAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAASRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHIERTKILEAFKTSRDVNTVFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKHQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPADAGAELSYHRLDDQLALLGKVLNAGDDMVGLEQLEDDADQIALDAARRSKGSMSAMSGANGMVYMEYSTGRKLAGQGQLKSKPKDPAKRHHLFKKRFA* 769
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1601017 1608964 - CsaV3_5G002620.1 Csa05g00262 528649

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00262 768 Gene3D - 463 703 IPR027417 -
Csa05g00262 768 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 292 454 IPR014001 -
Csa05g00262 768 TIGRFAM rad25: DNA repair helicase rad25 220 765 IPR001161 GO:0003678|GO:0006289|GO:0006367
Csa05g00262 768 SMART helicmild6 537 615 IPR001650 -
Csa05g00262 768 Gene3D - 271 462 IPR027417 -
Csa05g00262 768 MobiDBLite consensus disorder prediction 744 768 - -
Csa05g00262 768 PANTHER RAD25/XP-B DNA REPAIR HELICASE 4 767 - -
Csa05g00262 768 MobiDBLite consensus disorder prediction 36 50 - -
Csa05g00262 768 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 509 675 IPR001650 -
Csa05g00262 768 MobiDBLite consensus disorder prediction 1 50 - -
Csa05g00262 768 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 240 456 IPR027417 -
Csa05g00262 768 PRINTS Xeroderma pigmentosum group B protein signature 64 84 - -
Csa05g00262 768 PRINTS Xeroderma pigmentosum group B protein signature 150 169 - -
Csa05g00262 768 PRINTS Xeroderma pigmentosum group B protein signature 262 288 - -
Csa05g00262 768 PRINTS Xeroderma pigmentosum group B protein signature 293 315 - -
Csa05g00262 768 PRINTS Xeroderma pigmentosum group B protein signature 400 420 - -
Csa05g00262 768 PRINTS Xeroderma pigmentosum group B protein signature 466 488 - -
Csa05g00262 768 PRINTS Xeroderma pigmentosum group B protein signature 504 519 - -
Csa05g00262 768 PRINTS Xeroderma pigmentosum group B protein signature 524 546 - -
Csa05g00262 768 PRINTS Xeroderma pigmentosum group B protein signature 571 589 - -
Csa05g00262 768 PRINTS Xeroderma pigmentosum group B protein signature 590 615 - -
Csa05g00262 768 PRINTS Xeroderma pigmentosum group B protein signature 627 650 - -
Csa05g00262 768 PRINTS Xeroderma pigmentosum group B protein signature 718 737 - -
Csa05g00262 768 CDD SF2_C_XPB 473 637 - -
Csa05g00262 768 PANTHER DNA REPAIR HELICASE XPB1-LIKE 4 767 - -
Csa05g00262 768 Pfam Type III restriction enzyme, res subunit 280 436 IPR006935 GO:0003677|GO:0005524|GO:0016787
Csa05g00262 768 Pfam Helicase conserved C-terminal domain 66 190 IPR032830 -
Csa05g00262 768 CDD DEXHc_XPB 273 442 - -
Csa05g00262 768 MobiDBLite consensus disorder prediction 754 768 - -
Csa05g00262 768 MobiDBLite consensus disorder prediction 1 29 - -
Csa05g00262 768 Pfam ERCC3/RAD25/XPB C-terminal helicase 462 710 IPR032438 -
Csa05g00262 768 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 390 704 IPR027417 -
Csa05g00262 768 SMART ultradead3 277 458 IPR014001 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00262 K10843 ERCC3, XPB; DNA excision repair protein ERCC-3 [EC:5.6.2.4] - csv:101215293 1486.09
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g19 . . . . . . . Bma14g00606 . . . Cma15g01241 . Car15g01118 . . . . . . . . . . . . . . . . . Cone8ag0288 Cone12ag0294 . . . Csa05g00262 Chy09g01245 . . . . . . Bpe11g00661 . . . . Cmo15g01306 . . . . . Cpe13g00144 Bhi12g00288 . . Lac11g2069 Hepe06g1526 . Lcy12g1631 Cla01g00247 Cam01g0251 Cec01g0244 Cco01g0257 Clacu01g0249 Cmu01g0239 Cre09g2269 Lsi09g00237 . . Cme09g01780
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011686 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00262 Csa_Chr05 FPKM 8.040816 5.603051 11.883833 9.86473 8.175287 5.820995 8.613964 7.806215 8.164124 9.784241