Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00265 ATGGGAGGTTGCTGCTGCTGTTCTTCGAAAGGAACAGAATCAAATATTGCACCAGGCTACTATTATTACCCAAGAGCATCGGAGGAACATGTTCCTTTGTCACCACTTAGAACTCCCCGAGAATTTTCAACAGGGCTTTTAGTTGATACAAATCTAGATACATCAATCCCGGACACTTATAGATCACCTCCATTGCCTATGCCATATGATGTTGTTTTAACAAGTCCACTTACTCCACCTGTGGTTCAAGAAATTAGCTGCTATAAGAATGAAGCTGCAGCTCAGACAACAAATTCCAATACAATTCAAGAAACAGCATGCATAAATACTCGGGAAACATCAGCCAAATGTGAAGGCGTCGATGAATCAGATTGCAAGAAGCATACAGATTTTGAAGTGGACGCATTAAAGGAATCTGAAAATGAACTTTCAAAGGGTGTAGAATCTGCTGTCCTACCCATTGAAGAAGAGGATGTTTGCCCCATCTGTTTGGAAGAATATGATGGAGAGAACCCAAAACTTACCACAAAATGCGAACATCATTTTCATCTTGCATGCATTCTGGAATGGATGGAAAGAAGTGATATCTGTCCTGTCTGCGATCAGGAAATGGTTTTTAGCTCTCCAATTGATTAG 636 40.57 MGGCCCCSSKGTESNIAPGYYYYPRASEEHVPLSPLRTPREFSTGLLVDTNLDTSIPDTYRSPPLPMPYDVVLTSPLTPPVVQEISCYKNEAAAQTTNSNTIQETACINTRETSAKCEGVDESDCKKHTDFEVDALKESENELSKGVESAVLPIEEEDVCPICLEEYDGENPKLTTKCEHHFHLACILEWMERSDICPVCDQEMVFSSPID* 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1620832 1624667 + CsaV3_5G002650.1 Csa05g00265 528652

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00265 211 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 1 211 - -
Csa05g00265 211 Pfam Ring finger domain 159 200 IPR001841 -
Csa05g00265 211 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 208 IPR013083 -
Csa05g00265 211 SUPERFAMILY RING/U-box 154 207 - -
Csa05g00265 211 SMART ring_2 160 200 IPR001841 -
Csa05g00265 211 ProSiteProfiles Zinc finger RING-type profile. 160 201 IPR001841 -
Csa05g00265 211 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 211 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00265 - - - csv:101215765 443.736
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00265 Csa-Chr5:1620832 Csa06g00229 Csa-Chr6:1576669 3.54E-08 dispersed
Csa01g03244 Csa-Chr1:28575715 Csa05g00265 Csa-Chr5:1620832 1.41E-11 transposed
Csa03g03520 Csa-Chr3:31488687 Csa05g00265 Csa-Chr5:1620832 9.59E-13 transposed
Csa05g03051 Csa-Chr5:30639450 Csa05g00265 Csa-Chr5:1620832 1.88E-28 transposed
Csa06g01312 Csa-Chr6:10966909 Csa05g00265 Csa-Chr5:1620832 1.27E-12 transposed
Csa03g00881 Csa-Chr3:7341754 Csa05g00265 Csa-Chr5:1620832 1.20E-46 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g12 . . . . . Bpe07g00103 . Bma14g00607 . . Cma02g01003 Cma15g01239 . Car15g01116 . . Cpe05g00349 . . . . . . . . . . . . . . . Cone12ag0296 . . . Csa05g00265 Chy09g01243 . . . Bda07g00483 . . Bpe11g00660 . . . Cmo02g01472 Cmo15g01303 . . . . . Cpe13g00146 Bhi12g00284 . . . . . . Cla01g00249 Cam01g0254 Cec01g0246 Cco01g0260 Clacu01g0252 Cmu01g0242 Cre09g2267 Lsi09g00240 . . Cme09g01778
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004601 2 3 1 2 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00265 Csa_Chr05 FPKM 0.0 0.0 1.448389 0.76306 0.0 0.0 0.0 0.707861 0.844831 0.0