Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00268 ATGGCTCGGTTGGTTCTACCATGCAAGAGCGTGGGATTGGCAAGGAATAACCTCTTGGGTTTGATTTCATCTGCTCCTGTTCGAGCTGCACATAGGTGTGTTAATTCATTTGGAATTTCAGTCAAACGTAGCACTAGACAGAGGCCCTTATTCACTTCACAGGTGAAATCTGGACTGAATTATCGCTTTCCATATCATTTGCCGTTTGGGACTAAACAAGCTAGTAGGAAGCTGATTTGTTCAGTTGCAACAGAACCATTGCAAGAAAAAGCTGAAGAGAACAAAATGGATGCACCTAAAGAAATATTTTTGAGAGATTACAAGATGACTGATTACTATTTTGAGACGGTCGATTTGAAATTTTTGTTGGGTGAGGAGAAAACAATTGTCAATTCAAGAATAACGGTGTTCCCTAGAGTTGAAGAGTCCAATGCTCCTCTGGTTTTGAATGGTGAGGATATGAAGTTGATTTCAATTAAGATTAACAGTGAGGACCTGAAGGAGGGTGATTACTATCTGGACTCCCGCCAATTGAAGATTCACTCACCACCTGCTGGAACTTTTACTTTGGAAATTGCCAATGAGATACAGCCTCAGAAAAACACATCTTTGGAGGGATTATATAAATCATCTGGAAATTTCTGCACACAATGTGAAGCTGAAGGTTTCCGGAAGATCACGTATTACCAGGACCGTCCAGATATAATGGCAAAGTACACATGTCGCATAGAGGCCGATAAGTCATTGTACCCAGTGCTGCTCTCTAATGGAAATCTTATAGAACAGGGTGATTTAGAGGGTGGAAAACATTATGCCCTTTGGGAGGATCCCTTTAAGAAACCCTGCTACTTGTTTGCTTTAGTAGCTGGCAAGTTGGTAAGCAGAGACGATACTTTTATTACTCGTTCGGGTAGGAAAGTCTCCTTGAAGATATGGACCCCAGCTGAAGACTTACTCAAGACTGGGCATGCCATGTATTCCTTGAAGGCAGCTATGAAATGGGATGAAGATGTTTTTGGATTAGAATATGATCTGGATCTCTTCAATATTGTGGCTGTTCCAGATTTCAACATGGGAGCCATGGAAAACAAGAGTTTGAATATTTTTAATTCAAAACTTGTCTTGGCATCTCCGGAGACTGCTTCTGATGCAGATTATGCTGCCATATTAGGAGTTATTGGTCATGAGTATTTCCACAACTGGACTGGCAACAGGGTGACATGTCGTGATTGGTTCCAGCTGAGCCTTAAGGAAGGCCTTACTGTTTTCCGTGATCAGGAATTTTCGTCTGACATGGGAAGTCGTGCTGTGAAAAGAATTGCTGATGTTTCAAGACTTAGAAACTATCAGTTTCCTCAGGATGCTGGTCCTATGGCTCATCCAGTTCGACCACATTCCTATATCAAGATGGACAATTTTTACACAGGAAAGTGTTATTCTCTATGGGTTTGCACAAAATTCCAGCTATTTGTTTGTTCTTTCCTTTCCAATTTTTGTTTCTTTTCTTCAATTTTTACTGATATGAATTTCTTTTTGAACCTTGGGTTTTCAATTTGCTTCTTCTATCAAGTTATGATCTAA 1581 40.35 MARLVLPCKSVGLARNNLLGLISSAPVRAAHRCVNSFGISVKRSTRQRPLFTSQVKSGLNYRFPYHLPFGTKQASRKLICSVATEPLQEKAEENKMDAPKEIFLRDYKMTDYYFETVDLKFLLGEEKTIVNSRITVFPRVEESNAPLVLNGEDMKLISIKINSEDLKEGDYYLDSRQLKIHSPPAGTFTLEIANEIQPQKNTSLEGLYKSSGNFCTQCEAEGFRKITYYQDRPDIMAKYTCRIEADKSLYPVLLSNGNLIEQGDLEGGKHYALWEDPFKKPCYLFALVAGKLVSRDDTFITRSGRKVSLKIWTPAEDLLKTGHAMYSLKAAMKWDEDVFGLEYDLDLFNIVAVPDFNMGAMENKSLNIFNSKLVLASPETASDADYAAILGVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDMGSRAVKRIADVSRLRNYQFPQDAGPMAHPVRPHSYIKMDNFYTGKCYSLWVCTKFQLFVCSFLSNFCFFSSIFTDMNFFLNLGFSICFFYQVMI* 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1650582 1654802 + CsaV3_5G002680.1 Csa05g00268 528655

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00268 526 PRINTS Membrane alanyl dipeptidase (M1) family signature 356 366 IPR001930 GO:0006508
Csa05g00268 526 PRINTS Membrane alanyl dipeptidase (M1) family signature 411 423 IPR001930 GO:0006508
Csa05g00268 526 PRINTS Membrane alanyl dipeptidase (M1) family signature 224 239 IPR001930 GO:0006508
Csa05g00268 526 PRINTS Membrane alanyl dipeptidase (M1) family signature 274 289 IPR001930 GO:0006508
Csa05g00268 526 PRINTS Membrane alanyl dipeptidase (M1) family signature 392 407 IPR001930 GO:0006508
Csa05g00268 526 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 302 479 - -
Csa05g00268 526 PANTHER BNAC06G01820D PROTEIN 61 486 - -
Csa05g00268 526 Gene3D tricorn interacting facor f3 domain 110 292 IPR042097 -
Csa05g00268 526 Pfam Peptidase family M1 domain 326 480 IPR014782 GO:0008237|GO:0008270
Csa05g00268 526 Pfam Peptidase M1 N-terminal domain 124 284 IPR045357 -
Csa05g00268 526 SUPERFAMILY Leukotriene A4 hydrolase N-terminal domain 100 290 IPR042097 -
Csa05g00268 526 Gene3D - 294 377 - -
Csa05g00268 526 Gene3D Neutral Protease Domain 2 378 490 IPR027268 -
Csa05g00268 526 PANTHER - 61 486 IPR012779 GO:0008270
Csa05g00268 526 CDD M1_APN 106 475 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00268 K01256 pepN; aminopeptidase N [EC:3.4.11.2] - csv:101216008 1015.37
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00268 Csa-Chr5:1650582 Csa05g01786 Csa-Chr5:21190522 7.79E-10 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g301 . . . . . . Bma07g01667 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00268 . . . . . Bda09g00030 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004484 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 2 1 2 1 1 1 1 2 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00268 Csa_Chr05 FPKM 22.805937 24.925524 24.106596 22.761944 25.354774 24.705154 23.376575 36.755157 38.199783 36.906895