Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00269 ATGTACAAAACCTTATTGGGAAGTCAAGGATTTAGAAAAGGCATGGATCTTTACTTTAAAAGACATGATGGTCAAGCTGTTACCTGTGAAGATTTCTACGAGGCAATGCGAGATGCAAATGATGTTGATTTTGCTAACTTCTTATTATGGTACTCTCAAGCCGGGACCCCTCAAGTCAATGTTACATCATCTTACAATCCTGATGGTCATACATACACTTTAAAGTTCTCGCAATATGTTCCGCCAACTCCTGGGCAGCCAATTAAAGAGCCAATGTTTATACCTGTTGCTCTTGGTTTGCTAAACTCGTCTGGTTGTAATATGCCTCTTTCCTCCGTATATCATGATGGGGTATTGCAGTCTATATGTGGAGCTAATCAACAGCCAGTCTTCTCCACAGTCCTCAGGCTGACTAAGAAAGAAGAAGAGTTCGTCTTCTCGGAAGTACCTGAGCGGCCAGTTCCATCTTTGTTTAGGGGCTACAGTGCTCCTGTCCGTGTGGAAACAGATCTAAGTGATGATGATCTATTTTTCCTCCTCGCCAATGATTCAGATGAGTTCAACCGTTGGGAGGCTGGACAAGTGTTGGCTCGGAAACTGATGCTCCAACTGGTGGCTGATCACCAACAACATAAGCCATTGGTTCTCACCTCAAAGTTTGTTCAGGGTCTGAAATCCATACTTCGTGACACAAGTTTGGATAAAGAATTCATTGCCAAAGCAATAACACTTCCTGGCGAAGGGGAAATAATGGACATGATGGAGGTCGCAGATCCTGATGCTGTTCATGCTGTTCGAACTTTCATTAGGAAGGAACTGGCCTATGCATTGAAAGAAGATCTTCTTACTACAGTACACAACAATAGAAGTTCAGAAAATTATGAATTTAACCATCCTGAAATGGCCAGGCGTGCTTTGAAGAATACTGCTCTAGTATATCTTGCATTAATTGAGGATACTGAGATTGCGGATCTTGTGCTTCATGAGTATAAGATTGCCTCGAATATGACTGAGCAATTTGCAGCTTTGGCAGCTATAGCTCAGAAGCCAGGTGAAACTCGTGACAAGATTCTTGCTGACTTCTATAGCAAGTGGCAGCATGACTATTTGGTTGTCAATAAATGGTTTGCTCTTCAAGCCATGTCAGACATTCCTGGTAATGTCGAGAATGTTCGGAACCTCCTAAATCACAAGGCCTTTGACTTGCGAAATCCAAACAAGGTATATTCTTTGATTGGAGGCTTCTGCGGATCAATTGTTAACTTTCACTCAAAGGACGGATCGGGCTACAAATTCTTGGGAGAAATTGTCATGCAACTAGACAAAATTAATCCCCAGGTTGCCTCTCGAATGGTCTCTGCATTCTCAAGATGGAAGCGTTATGACGAAACGCGACAAGAACTTGCCAAGGGACAACTGGAGATCATAATGTCTGCCAATGGACTGTCTGAAAATGTGTTTGAAATTGCATCAAAAAGCTTAGCAGCTTGA 1491 42.45 MYKTLLGSQGFRKGMDLYFKRHDGQAVTCEDFYEAMRDANDVDFANFLLWYSQAGTPQVNVTSSYNPDGHTYTLKFSQYVPPTPGQPIKEPMFIPVALGLLNSSGCNMPLSSVYHDGVLQSICGANQQPVFSTVLRLTKKEEEFVFSEVPERPVPSLFRGYSAPVRVETDLSDDDLFFLLANDSDEFNRWEAGQVLARKLMLQLVADHQQHKPLVLTSKFVQGLKSILRDTSLDKEFIAKAITLPGEGEIMDMMEVADPDAVHAVRTFIRKELAYALKEDLLTTVHNNRSSENYEFNHPEMARRALKNTALVYLALIEDTEIADLVLHEYKIASNMTEQFAALAAIAQKPGETRDKILADFYSKWQHDYLVVNKWFALQAMSDIPGNVENVRNLLNHKAFDLRNPNKVYSLIGGFCGSIVNFHSKDGSGYKFLGEIVMQLDKINPQVASRMVSAFSRWKRYDETRQELAKGQLEIIMSANGLSENVFEIASKSLAA* 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1654817 1659156 + CsaV3_5G002690.1 Csa05g00269 528656

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00269 496 PANTHER - 1 496 IPR012779 GO:0008270
Csa05g00269 496 Gene3D - 55 169 IPR038438 -
Csa05g00269 496 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 1 61 - -
Csa05g00269 496 Pfam Domain of unknown function (DUF3458_C) ARM repeats 173 495 IPR024601 -
Csa05g00269 496 Pfam Domain of unknown function (DUF3458) Ig-like fold 55 169 IPR035414 -
Csa05g00269 496 Gene3D Neutral Protease Domain 2 1 54 IPR027268 -
Csa05g00269 496 Gene3D - 171 495 IPR037144 -
Csa05g00269 496 PANTHER BNAC06G01820D PROTEIN 1 496 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00269 K01256 pepN; aminopeptidase N [EC:3.4.11.2] - csv:101216008 982.245
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g302 . . . . . . Bma07g01666 . . . Cma02g01441 . Car02g01208 . . . Cpe05g00346 . . . . . . . . . . . . . . Cone8ag0292 Cone12ag0298 . . . Csa05g00269 Chy09g01240 . . . . Bda09g00031 . . . . . Cmo02g01477 Cmo15g01300 . . . . . Cpe13g00149 Bhi12g00279 . . Lac11g2075 Hepe06g1533 . Lcy12g1636 Cla01g00252 Cam01g0258 Cec01g0250 Cco01g0263 Clacu01g0256 Cmu01g0245 Cre09g2264 Lsi09g00243 . . Cme09g01774
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004484 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 2 1 2 1 1 1 1 2 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00269 Csa_Chr05 FPKM 1.621011 1.310692 0.0 0.0 0.991397 1.153987 0.811401 0.0 0.0 0.0