Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00270 ATGAAGTCTCCCCCAATTTCAGCTTCGATTTCTTCTTCTCCGATTCTACCGCAGCTGTTAAACCCTGAATCTAACATTGTCACCGTTAATGTTGGTGGCCACCTCTTTCAAACCACCAAGCAAACCCTAGCCATAGCCGGTTCCAGTTCTCTGTTATCAACCATCTCCGATTCATCGCAATCCCTCGTACCCTTTATCGATCGAGATCCCGATCTCTTTTCCCTCATTCTTTCGCTTCTTAGAACCGGTTATCTTCCTTCCAAAGCCAAAGCCTTTGATCTCCAAGACCTTATTTCAGAGTCCCAGTTCTATGGAGTTGAATCCCTTTTAATCAATTCTCTTTCTAATCCTTCTCAATTCGAAGCTTTTAATCTCGAGAAATCTCTGATTCTCCCTCTCAATGGTCGAGATTCTCCGTCGACAATCGCGTCAACGCCGTTTGGATCACTCCATGTCGCTCACGGCGGCAAGATCACCTCTTTTGATTGGTCGCTTCAGAGAAAGACGACGATTCTAACGCAATTCTCCGTCATTGATTCTCTTTTAGCGTTGTCGCCATCACTGGCCGCTGCCGGCGCTACCGACTTCTCTGGTTTGCAAATCCTCAATCTTCAAACAGGCCAAGTGAAATCAATTCTTAATTGGGAGAATGTGACTCGGTCCAGTTCTACCGTGCAAGCCATCGGAGCTTCTTCTGAGCTTCTCTTCACCAGCTTCGAATCAGGCAGAAGAAACTCAAATTCCATAATGATATACGATTTACAAACCTTCAATCCAGTTACTGAAATCGCTCACAACGAGATCTACGGTGCGGAGATTGATTCAGCAATCCCAGCCACAATGTTGAAATGGGTTGCAGGTTATAATCTGTTAATGGCTTCTGGGTCTCACAGTGGACCTTCTGGAGTACAGGGTAACATTAAATTCTGGGACATTAGGAGTGGGAACATAGCTTGGGAGGTGAAGGAGAAGGTGGATTGTTTCTCAGACATGACTGTATGTGAGAATCTATCTGCCATTTTCAAGATTGGTGTGAGCTCTGGTGAAGTTTATAGTGCAGATTTGAGAAAACTTGGAGATGAGAATCCATGGATTTGTCTTGGGGATAGGATGAAGGTGATGAATGGGAAGAAAGTTGGGGTTGGAGGGAAGATTGAGAGTTACGGAAATCAAGTGTTTTGCAGCAGAGAAGGAGGGAGTATAGAGTTATGGTCTGAAGTAACAGTTGGGAATGGAGGAAATAAGGAAGGAGGATTAGGGTTAGAGGAGAGAGTTTTTAGGAAGAATTTGATGGGGAGAATGAAGGATTTGGGAGGTGGGAAAGTAATGAAATTAGGATTTGGTGGGAATAAGATGTTTGTGATAAGAAAAGATGAACAATGTGTGGAGGTTTGGAAGAGTTCAGGTAAGGGATTTTGGGATGCTTTGTAA 1431 44.03 MKSPPISASISSSPILPQLLNPESNIVTVNVGGHLFQTTKQTLAIAGSSSLLSTISDSSQSLVPFIDRDPDLFSLILSLLRTGYLPSKAKAFDLQDLISESQFYGVESLLINSLSNPSQFEAFNLEKSLILPLNGRDSPSTIASTPFGSLHVAHGGKITSFDWSLQRKTTILTQFSVIDSLLALSPSLAAAGATDFSGLQILNLQTGQVKSILNWENVTRSSSTVQAIGASSELLFTSFESGRRNSNSIMIYDLQTFNPVTEIAHNEIYGAEIDSAIPATMLKWVAGYNLLMASGSHSGPSGVQGNIKFWDIRSGNIAWEVKEKVDCFSDMTVCENLSAIFKIGVSSGEVYSADLRKLGDENPWICLGDRMKVMNGKKVGVGGKIESYGNQVFCSREGGSIELWSEVTVGNGGNKEGGLGLEERVFRKNLMGRMKDLGGGKVMKLGFGGNKMFVIRKDEQCVEVWKSSGKGFWDAL* 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1660141 1661571 + CsaV3_5G002700.1 Csa05g00270 528657

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00270 476 PANTHER BTB/POZ DOMAIN-CONTAINING ADAPTER FOR CUL3-MEDIATED RHOA DEGRADATION PROTEIN FAMILY MEMBER 18 469 IPR045068 -
Csa05g00270 476 Gene3D Potassium Channel Kv1.1; Chain A 20 117 IPR011333 -
Csa05g00270 476 Pfam BTB/POZ domain 27 113 IPR003131 GO:0051260
Csa05g00270 476 CDD BTB_POZ_KCTD-like 27 104 - -
Csa05g00270 476 PANTHER PROTEIN BINDING PROTEIN 18 469 - -
Csa05g00270 476 Gene3D - 140 411 IPR015943 GO:0005515
Csa05g00270 476 SUPERFAMILY WD40 repeat-like 153 406 IPR036322 GO:0005515
Csa05g00270 476 SMART BTB_4 25 121 IPR000210 GO:0005515
Csa05g00270 476 SUPERFAMILY POZ domain 24 112 IPR011333 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00270 - - - csv:101216493 885.174
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01886 Csa-Chr1:15843129 Csa05g00270 Csa-Chr5:1660141 8.53E-19 dispersed
Csa04g01614 Csa-Chr4:15510642 Csa05g00270 Csa-Chr5:1660141 1.67E-64 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g304 . . . . . . . Bma14g00702 . . Cma02g01442 . Car02g01209 . . . Cpe05g00345 . . . . . . . . . . . . . . Cone8ag0294 Cone12ag0300 . . . Csa05g00270 Chy09g01239 . Blo03g00341 . Bda07g00482 . . . . . . Cmo02g01478 . . . . . . . Bhi12g00278 . . Lac11g2076 Hepe06g1534 . Lcy12g1637 Cla01g00253 Cam01g0259 Cec01g0251 Cco01g0264 Clacu01g0257 Cmu01g0246 Cre09g2263 Lsi09g00244 . . Cme09g01773
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010340 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00270 Csa_Chr05 FPKM 20.537727 20.074652 23.646095 21.647448 13.584046 13.140884 13.441125 1.948006 2.033301 2.018328