Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00271 ATGGATGCCACGGTGGCGGTTGCAGTAGCTGCTTTGGTGGCGACGTACTTGATTTGGTTCTTGAATATCAAACGGTCCTTGAATGGACCACGCGTTTGGCCACTACTAGGCAGTCTTCCAGGTTTGATTAAGAATAGTCATCGTATGCATGATTGGATTGTTGAGAATTTGCAGTCCACGGGTGGCACGTACCAGACTTGCATATGCGCTATTCCGTTTTTGACTAAGAAGCAAGGTCTGGTGACAGTCACGTGTGACCCGAAGAATTTGGAGCATATTTTGAAGACACGATTCGAGAATTATCCAAAAGGGCCTAATTGGCAGGCCGTGTTTCATGATTTGCTTGGTGATGGAATCTTCAATTCAGATGGTGATACGTGGTTGTTCCAACGAAAGACTGCTGCATTGGAATTTACTACTAGAACTCTTCGTCAAGCCATGGTTCGTTGGGTTAGTCGAGCTATTAAGTCTCGATTTTGCCCAATCCTTGAGTTGGCTCAACGTCGAGAGAATAGCTTCGCTATGGCATTTGATCAAGCCACAGAAGCCACATTGTGTCGCTTTATTTTACCTGCCTTTGTATGGAGGCTAAAGAAATGGCTTCGACTCGGGATGGAAGTCACCTTAACCCAAAGTCTAAACCACACAAATCAATATTTAACCAATATCATCAACACACGTAAGCACGAATTATCCAATCAGCACCAGGTCAACAGTAATCAAACCCCTCACGACGACTTGCTATCAAGATTCATGAAAAAGAAGGAATCCTACTCGGACACATTTCTCCAACACGTGGCACTCAATTTCATCCTAGCTGGACGGGACACCTCATCCGTCGCCCTGAGCTGGTTCTTCTGGTTAGTCATCCAAACCCCACGTGTGGAGGAAAAAATCCTCGCTGAAATCTGCACCGTCCTGATGGAGACACGTGGCAAAGAAATGTCCACATGGACGGAAGAGCCATTAGGATTTGAAGAAGTGGATCGATTGATTTACCTCAAAGCCGCCTTATCGGAAACTCTCCGACTCTACCCATCGGTGCCGGAAGATTCAAAACATGTGATAAACGACGATGTTTTACCCACCGGAACTTTCGTCCCTGCCGGCTCCTCCGTCACGTATTCAATATATTCAACTGGTCGAATGAAATTCATCTGGGGAGAAGATTGTTTAGAATTCAAACCAGAGAGATGGTTACATACAAATGAAAATGCTTATAAATTCGTTGCCTTTAATGCCGGCCCAAGAATTTGTTTAGGAAAAGATTTGGCTTATTTACAAATGAAGTCGATTGCGGCAGCGGTCTTGCTCCGCCACCGCCTGACGGTGGTCCCCGGCCACCGTGTTGAGCAAAAGATGTCGTTGACGTTGTTCATGAAGTATGGCCTTAAAGTTCACTTGCATCCCAGAGATTTAGGCCGTGTGGTGGAGACAATTAGCAAAACCGCGGCGGAGACGGCGACTTGA 1470 46.05 MDATVAVAVAALVATYLIWFLNIKRSLNGPRVWPLLGSLPGLIKNSHRMHDWIVENLQSTGGTYQTCICAIPFLTKKQGLVTVTCDPKNLEHILKTRFENYPKGPNWQAVFHDLLGDGIFNSDGDTWLFQRKTAALEFTTRTLRQAMVRWVSRAIKSRFCPILELAQRRENSFAMAFDQATEATLCRFILPAFVWRLKKWLRLGMEVTLTQSLNHTNQYLTNIINTRKHELSNQHQVNSNQTPHDDLLSRFMKKKESYSDTFLQHVALNFILAGRDTSSVALSWFFWLVIQTPRVEEKILAEICTVLMETRGKEMSTWTEEPLGFEEVDRLIYLKAALSETLRLYPSVPEDSKHVINDDVLPTGTFVPAGSSVTYSIYSTGRMKFIWGEDCLEFKPERWLHTNENAYKFVAFNAGPRICLGKDLAYLQMKSIAAAVLLRHRLTVVPGHRVEQKMSLTLFMKYGLKVHLHPRDLGRVVETISKTAAETAT* 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1665164 1666738 + CsaV3_5G002710.1 Csa05g00271 528658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00271 489 PANTHER CYTOCHROME P450 170 473 - -
Csa05g00271 489 Pfam Cytochrome P450 186 458 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00271 489 PRINTS P450 superfamily signature 273 290 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00271 489 PRINTS P450 superfamily signature 419 430 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00271 489 PRINTS P450 superfamily signature 336 347 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00271 489 PRINTS P450 superfamily signature 410 419 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00271 489 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 412 421 IPR017972 GO:0005506|GO:0016705
Csa05g00271 489 PANTHER CYTOCHROME P450 86A7 170 473 - -
Csa05g00271 489 PANTHER CYTOCHROME P450 86A7 5 171 - -
Csa05g00271 489 PANTHER CYTOCHROME P450 5 171 - -
Csa05g00271 489 PRINTS E-class P450 group I signature 419 442 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00271 489 PRINTS E-class P450 group I signature 335 353 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00271 489 PRINTS E-class P450 group I signature 409 419 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00271 489 PRINTS E-class P450 group I signature 262 279 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00271 489 PRINTS E-class P450 group I signature 282 308 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00271 489 Gene3D Cytochrome P450 22 473 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00271 489 SUPERFAMILY Cytochrome P450 20 471 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02499 Csa-Chr1:22072491 Csa05g00271 Csa-Chr5:1665164 0 dispersed
Csa05g00271 Csa-Chr5:1665164 Csa07g01975 Csa-Chr7:19392733 6.03E-135 dispersed
Csa05g00271 Csa-Chr5:1665164 Csa06g00061 Csa-Chr6:403217 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00271 K15398 - csv:101216733 969.148