Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00272 ATGGATTTTCAGAGGCATTTTCTAGGTGGGTTTTCCATATGCGCTTTGGTTTTGCTGCTGATTTTTCCTTCTCACGTGACTGCTGGGGATATAGTTCATCATGACGATTTGACTCCCAAAAAGCCTGGCTGTGAGAACGACTTCATTCTGGTTAAAGTTCAAACTTGGATTGATGGCAAAGAAGCTAGTGAATTTGTCGGTGTTGGTGCTAGATTTGGCGCTACCATTGTGTCAAAGGAGAAAAATGCAAACCAAACACGCCTGGTTCTTGCAAATCCCCGTGATTGTTGCAGTGTGCCAAAGAACAAGCTTTCTGGAGATATAATCATGGTTGATCGAGGTCACTGCAAATTTACTACAAAAGCGAATATTGCAGAAGCTGCAGGTGCTTCAGCTATACTCATAGTAAATAACCAAAAAGAACTTTACAAGATGGTTTGTGATCCTGATGAGACGGATCTTAATATACATATACCTGCTGTCATGCTTCCACAAGATGCAGGAACTAGCTTGGAGAAGATGCTAATCAGTAATTCATCAGTGTCTGTTCAGCTCTACTCTCCACTACGACCACCAGTTGACATAGCTGAAGTATTCTTATGGTTGATGGCTGTTGGTACGATCTTGTGCTCATCTTTTTGGTCTGCCTGGAGTGCCAGGGAAGCAGCTATCGAGCAGGACAAGCTGCTAAAGGATGGTGCAGATGATATTCAAAATGCTGAAGACATAGGCAGCCCTGGTGTTGTATATATTAACATGGCATCAGCAGTTCTATTTGTCGTCGTTGCTTCTTGCTTTTTGATTTTGCTTTACAAACTCATGTCGTACTGGTTCATCGAGCTTTTGGTAGTTCTTTTCTGCATAGGAGGTGCAGAGGGTTTGCAAACTTGTTTGGTTGCGTTATTGTCAAGATGCTTTAAGCAAATTGGAGAATCATACGTCAAAGTGCCATTCTTTGGAGCTGTTTCTTACCTCACAGTAGCTGTTTCTCCATTCTGCATAGCATTTGCTGTCGTTTGGGCTGTTTATCGGAATGTGTCGTTTGCCTGGATTGGTCAAGACGTACTTGGAATTGCACTGATAATTACAGTTCTTCAAATAGTTCATATACCGAATCTTAAGGTTGGAACAGTGCTCCTCAGTTGTGCCTTCCTCTATGATATCTTTTGGGTATTTGTTTCTAAGAAGGTGTTCAATGAAAGTGTGATGATTGTGGTGGCTCGTGGCGATAAAAGTGGTGAAGATGGCATCCCAATGCTGCTAAAGATTCCTCGCATGTTTGATCCATGGGGTGGTTATAGCATTATCGGATTTGGTGACATCCTTTTACCTGGACTTGTAGTAGCATTTTCTCTCAGGTATGACTGGTTGGCGAACAAGAGCCTTCGGGTTGGTTACTTCTTACCAGCAATGCTTGCTTATGGATCAGGTAATGAAGGAAGTAACGCATTTCTTTGTGATGTTCATATTTTTTGTGTTGTGATGTTTGGTTTAATTTTGAAGGGTTTTGTAATTTTTGTCAGGTCTTCTGATTACCTATGTGGCTTTGAACCTGATGGATGGTCATGGCCAGCCCGCGCTGCTTTACATCGTCCCATTCACTCTCGGAAGCCAGCCTGTCTAGAGAAAGCAAGAGCTGGTGTTGAAGGAGCAAACAAGTTCTCAGAAAGGCAGCCAATTGGCACATCGGCGCAGACGGACAAGGACTACAAAGAGCCACCGCCGGCGCCACTGTACGAGCCGGGCGAGCTGAAGTCATGGTCGTTTTACAGAGCCGGAATCGCGGAGTTTATGGCCACTTTCTTGTTCCTCTACATCACCATCTTGACGGTGATGGGAGTCAACCGATCTCCGTCCAAATGCAACAGCGTCGGCATTCAGGGCATTGCTTGGGCCTTCGGCGGCATGATCTTCGCCCTCGTCTACTGCACCGCCGGCATCTCCGGTAAAACCCTGAAACCTAAACCACTGTCTTGTTCCGTTTTGTTCTTAGATCTGTATGGTGTTTGGAAGTATTGTATAGGGTTTGGATGA 2034 44.44 MDFQRHFLGGFSICALVLLLIFPSHVTAGDIVHHDDLTPKKPGCENDFILVKVQTWIDGKEASEFVGVGARFGATIVSKEKNANQTRLVLANPRDCCSVPKNKLSGDIIMVDRGHCKFTTKANIAEAAGASAILIVNNQKELYKMVCDPDETDLNIHIPAVMLPQDAGTSLEKMLISNSSVSVQLYSPLRPPVDIAEVFLWLMAVGTILCSSFWSAWSAREAAIEQDKLLKDGADDIQNAEDIGSPGVVYINMASAVLFVVVASCFLILLYKLMSYWFIELLVVLFCIGGAEGLQTCLVALLSRCFKQIGESYVKVPFFGAVSYLTVAVSPFCIAFAVVWAVYRNVSFAWIGQDVLGIALIITVLQIVHIPNLKVGTVLLSCAFLYDIFWVFVSKKVFNESVMIVVARGDKSGEDGIPMLLKIPRMFDPWGGYSIIGFGDILLPGLVVAFSLRYDWLANKSLRVGYFLPAMLAYGSGNEGSNAFLCDVHIFCVVMFGLILKGFVIFVRSSDYLCGFEPDGWSWPARAALHRPIHSRKPACLEKARAGVEGANKFSERQPIGTSAQTDKDYKEPPPAPLYEPGELKSWSFYRAGIAEFMATFLFLYITILTVMGVNRSPSKCNSVGIQGIAWAFGGMIFALVYCTAGISGKTLKPKPLSCSVLFLDLYGVWKYCIGFG* 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1667723 1680846 - CsaV3_5G002720.1 Csa05g00272 528659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00272 677 Pfam PA domain 88 171 IPR003137 -
Csa05g00272 677 Pfam Signal peptide peptidase 249 477 IPR007369 GO:0004190|GO:0016021
Csa05g00272 677 SUPERFAMILY Aquaporin-like 583 649 IPR023271 -
Csa05g00272 677 Gene3D Glycerol uptake facilitator protein. 576 655 IPR023271 -
Csa05g00272 677 SMART psh_8 247 514 IPR006639 GO:0004190|GO:0016021
Csa05g00272 677 SUPERFAMILY PA domain 94 143 IPR046450 -
Csa05g00272 677 PRINTS Major intrinsic protein family signature 633 657 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa05g00272 677 PRINTS Major intrinsic protein family signature 591 610 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa05g00272 677 Pfam Major intrinsic protein 583 654 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa05g00272 677 CDD PA_GO-like 47 185 - -
Csa05g00272 677 PANTHER SIGNAL PEPTIDE PEPTIDASE 11 477 IPR007369 GO:0004190|GO:0016021
Csa05g00272 677 Gene3D - 52 188 - -
Csa05g00272 677 PANTHER SIGNAL PEPTIDE PEPTIDASE-LIKE 2 11 477 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00272 Csa-Chr5:1667723 Csa05g00796 Csa-Chr5:5583608 1.93E-50 dispersed
Csa07g00686 Csa-Chr7:4901681 Csa05g00272 Csa-Chr5:1667723 8.12E-07 dispersed
Csa06g00303 Csa-Chr6:2193231 Csa05g00272 Csa-Chr5:1667723 3.46E-152 transposed
Csa03g01721 Csa-Chr3:12896278 Csa05g00272 Csa-Chr5:1667723 3.37E-14 wgd
Csa05g00272 Csa-Chr5:1667723 Csa06g00059 Csa-Chr6:385844 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00272 K09597 - csv:101216966 949.118