Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00273 ATGGCTTCAACTTTCACTTTCCTTCCATTTCCTCTCATTCTCTCTCCCCGCTCAAATTTTCCTTTTATTAGACCTCAATTTCACCGCCAGTATCTTCCCGCCATTCGAATTCTCCGACCTTCAGTTCCTTCCGCCATCGGACCGGACGGCAAATTCTATCCGGACCCGGCCGACGATGACCCACCGGAAGCTCCGGAAGATTCTGGCCATGGAGTTTCGAAGTTTCAGCAGATATACCGCCAGGCAGCTCGTGCGAGGAAGATTCAAGAGGAGGATTTCAAGAAGCATCAGTCTACTTATCTTTCGGCCATTGCTGACGTTGAGGATGCTCCTGAGAATGCGGAGTATTTGAATTCGGAGAGCTCGGGTGATGATTTGTTTGGTGAAATTGACAAAGCTATTGCTCTGAAGCGGAAGGAGTTCGTGAAGCAGGGACTTCTCAAGCCTAACCCAAAGAAAGAAAAGGTGGGTGAGAAAGATGAAATTGAGGGCATTGATGAGTTGGAGACTGAGGAGGTCGCGGATTTGGAAGAGATTAACGAGCTTCGAGGGCTTACAGTGATTTCGGAGGATGTGGACGTGGAGGAGGACGAGGATGAAGATGGGCCTAGGAATTTGGATGACAATGTAAGTGCAATAGGTGGTGAAGATGAACTATCTTCTTTTAATTCTTTTGATGTGGATTTTGATAGCTATGGAAAAGTTAAGGCCAGGATTGTGGAACCCAAGTTCAAAATGACTTTAGCTGAGCTATTGGATGAAAGTAAGGTCGTTCCAGTTTCTGTTTTTGGCAATTTAGAGATAGAAATTACTGGTATTCAACACGATTCGAGGGTGGTTACCGCTGGCGACTTGTTTGTATGTTGTGTTGGGAGGGAAACTGATGGACATTTGTATTTAACTGAGGCAGATAAGAGGGGTGCAGTGGCTGTGGTGGCTAGCAAGGAGATAGACATAGAAGAAACTTTGGGCTGTAAAGCTTTGGTAATGGTGGAGGATACTAACTCTGTTCTTCCTGCATTGGCTGCTTCTTTTTACAGGAACCCCTCAAAGAATATGGCTGTGATAGGAATAACTGGGACGGATGGTAAAACGAGCACATCCTACTTGATAAAGGGGATGTATGAGGCAATGGGGTTGAGAACTGGGTTGCTAGGGACAGTGGCTTATTATTTACATGGGGACAATAAGTTGGAGTTGCCAAGTACAACCCCAGATGCTATTTTGGTCCAAAACTTAATGGCGAAGATGCTTCATAATGGAACTGAAGCGGTTGTCATGGAGGTTTCATCTGATGGACTTGCTCGTGGCAGGTGCGATGAAGTTGATTTTGATATAGCGGTCTTTACAAATTTGACTAGGGACCATTTGGATTTTCAAGGGTCTGAAGAGGAGTATAGGGATGCCAAAGCCAAGCTATTTAAAAGGATGGTGGATCCAGACCGACACCGAAAAGTTATTAACATTGATGATCCCAATGCACCATTCTTCATAGGTCAAGGAAACCCAGATGTGCCTGTTGTAACCTTTGCAATGGAAAACAAAAATGCTGACGTCCATCCCCTGAAATATGAATTGTCACTATTTGAGACACAGGTTTTGGTTCACACTCCCCAGGGAATACTGGAGATATCATCGGGTTTGCTTGGAAAGCACAACATTTACAATATTCTTGCAGCAGTGGCAGTGGGGATTGCAGTTGGAGCACCATTAGAGGATATTGTTAGAGGTGTTGAAGAAGTTGATGCTGTTCCTGGGAGATTCGAGCTGATTGATGAGGAGCAAGCATTTGGAGTAATTGTTGATCATGCTCATACTCCAGATGGTCTATCCCGGCTGCTTGATTCTGTAAGGGAGCTTGGGCCAAGGAGGATTATTACTGTTTTTGGATGCTGTGGTGAGCATGACAGGGGGAAAAGACCCATGATGACAAAGATTGCAACTGATAAAAGCGATGTTACAATTCTGACATCTGATAATCCAAGGAATGAAGATCCATTGGACATCTTGGATGATATGTTGGCTGGAATAGGCTGGACTATGCAGGATTACTTGAAACACGGAGAAAATGATTACTACCCACCTCTCTCAAATGGTCATAGGATTTTCCTGCATGATATCAGACGTGTGGCTGTACGTGCTGCTGTTGCAATGGGTGAGGAAGGCGACGTGGTTGTGGTTGCTGGCAAGGGCCACGAAACATATCAAATTGAAGATGATAAAACAGATTTTTTTGATGATAGAGAAGAATGCAGAGAAGCACTACAATATGTTGATGAACTTCACCAAGCTGGAATTGACACAAGTGAATTTCCATGGCGGCTACCAGAGAGTCACTGA 2340 44.62 MASTFTFLPFPLILSPRSNFPFIRPQFHRQYLPAIRILRPSVPSAIGPDGKFYPDPADDDPPEAPEDSGHGVSKFQQIYRQAARARKIQEEDFKKHQSTYLSAIADVEDAPENAEYLNSESSGDDLFGEIDKAIALKRKEFVKQGLLKPNPKKEKVGEKDEIEGIDELETEEVADLEEINELRGLTVISEDVDVEEDEDEDGPRNLDDNVSAIGGEDELSSFNSFDVDFDSYGKVKARIVEPKFKMTLAELLDESKVVPVSVFGNLEIEITGIQHDSRVVTAGDLFVCCVGRETDGHLYLTEADKRGAVAVVASKEIDIEETLGCKALVMVEDTNSVLPALAASFYRNPSKNMAVIGITGTDGKTSTSYLIKGMYEAMGLRTGLLGTVAYYLHGDNKLELPSTTPDAILVQNLMAKMLHNGTEAVVMEVSSDGLARGRCDEVDFDIAVFTNLTRDHLDFQGSEEEYRDAKAKLFKRMVDPDRHRKVINIDDPNAPFFIGQGNPDVPVVTFAMENKNADVHPLKYELSLFETQVLVHTPQGILEISSGLLGKHNIYNILAAVAVGIAVGAPLEDIVRGVEEVDAVPGRFELIDEEQAFGVIVDHAHTPDGLSRLLDSVRELGPRRIITVFGCCGEHDRGKRPMMTKIATDKSDVTILTSDNPRNEDPLDILDDMLAGIGWTMQDYLKHGENDYYPPLSNGHRIFLHDIRRVAVRAAVAMGEEGDVVVVAGKGHETYQIEDDKTDFFDDREECREALQYVDELHQAGIDTSEFPWRLPESH* 780
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1682202 1688061 - CsaV3_5G002730.1 Csa05g00273 528660

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00273 779 Pfam Mur ligase family, catalytic domain 269 346 IPR000713 GO:0009058|GO:0016881
Csa05g00273 779 SUPERFAMILY MurD-like peptide ligases, peptide-binding domain 584 756 IPR036615 GO:0009058|GO:0016881
Csa05g00273 779 MobiDBLite consensus disorder prediction 190 209 - -
Csa05g00273 779 Pfam Mur ligase family, glutamate ligase domain 584 667 IPR004101 GO:0009058|GO:0016881
Csa05g00273 779 MobiDBLite consensus disorder prediction 53 67 - -
Csa05g00273 779 MobiDBLite consensus disorder prediction 48 72 - -
Csa05g00273 779 PANTHER MUR LIGASE FAMILY MEMBER 224 769 - -
Csa05g00273 779 SUPERFAMILY MurD-like peptide ligases, catalytic domain 349 581 IPR036565 GO:0005524|GO:0009058
Csa05g00273 779 TIGRFAM murE: UDP-N-acetylmuramyl-tripeptide synthetase 268 756 IPR005761 GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301
Csa05g00273 779 Gene3D - 247 347 - -
Csa05g00273 779 Pfam Mur ligase middle domain 358 563 IPR013221 GO:0005524|GO:0009058|GO:0016881
Csa05g00273 779 Gene3D - 349 587 IPR036565 GO:0005524|GO:0009058
Csa05g00273 779 Gene3D - 589 766 IPR036615 GO:0009058|GO:0016881
Csa05g00273 779 PANTHER UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--2,6-DIAMINOPIMELATE LIGASE MURE HOMOLOG, CHLOROPLASTIC 224 769 - -
Csa05g00273 779 SUPERFAMILY MurE/MurF N-terminal domain 246 349 IPR035911 -
Csa05g00273 779 Hamap UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 246 755 IPR005761 GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00273 - - - csv:101217207 1514.59
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g313 . . . . . . . Bma14g00701 . . Cma02g01444 . Car02g01212 . . . Cpe05g00342 . . . . . . . . . . . . . . Cone8ag0299 Cone12ag0305 . . . Csa05g00273 Chy09g01235 . Blo03g00340 . Bda07g00481 . . . . . . Cmo02g01481 . . . . . . . Bhi12g00272 . . . Hepe06g1538 . Lcy12g1641 Cla01g00256 Cam01g0262 Cec01g0254 Cco01g0267 Clacu01g0260 Cmu01g0249 Cre09g2260 Lsi09g00249 . . Cme09g01769
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006982 1 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00273 Csa_Chr05 FPKM 482.087158 548.790222 226.803604 224.675735 145.869797 151.313507 129.185593 73.068878 79.757919 70.307274