Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00281 ATGGGACAAGAGACAGAATTGGACTTTGACAGCCTTTGCGCTGTGGATCTAAGTCCTAACACCGTTCTTCCATCGATTCCACGACGTTCGAGCATTAAAAATAGAAGCACAAGAAAAAAACTAAAGCATGAAGATTTTGTTTTGAGTGTAAAGGATGATTTTACGGAGATTAAATTTGGTGGTGGTCACAGGTCTCGAAAAAGTAATTCATCTAGCTTAATTGAACAGGAAGACAATGAGAGTAAATGTTTTGAACTGAATGTTGAGGATGATTTCACAGAGATTAGAATTGGCCGTGACCATAGTTCTCATAAAAGCAATTCTCCTAGCCTAGTTGAATTGGAAGATGACAAAGGGCTCAAGCGACGTTCGAAGTACCAAAGCTCTGAAGACATAGGTAAAATAGAAGGGATGGGGATTCAAGGAGAAAGGAGAAAAATAGAAATTTCTCGTGAGGATTACACCTCTTGGTCTTCTGGTATTGTTGACTCTTTGTGTAGTTCTGACGAGGAAAAGCCAGAGAGGAGAGATCTGATATTATCTCTGGACACAAAATTGAATCAACCATCAGTTAATAAGGCTTGCATGGGCCCACGTTCATCAGATAGTTTCATTGAGATCTACTCAGGTTTAGAGAACAGTGAAACTGTATCGAAAGATCCAAGCAATCAGCTTGGAAATGTTACAGGCATTAGACCCCTTCACAATGGCAAAAAACTTTTCAAGAGAGACAAAGTTCATGCATTGCAGAAGTCATTCTCTGCTAAGGTAGAAATGCCTAGCAATCATCTTCCAGTGGAAAGTGATCTACGGTTTGGACACAGTCCAAAGGTTCATATAAGTCCTTTCAGGAAAATTTTGGATCCATTTATGAAATCTAAGTCTGTCAGAAGTCGTTTCAGTCATGCGGTAGAAGCTGGTAGAGATAAAGCTATTAAGGCAATTAACTTGGAGAGAGATGAGACATCAAGTACACCAAAGAGTTCAGATTCCGACTCTAATTTTTCGAATAATGATAATCTCCACAATGTTGTTGCATCTTCGCCCGTTCATTTACATGGCTCTCTCAAGTTGGAGAAAAAACATGGGATGCCATTTTTTGAGTTCTCTCAGAGCTCCCCTGAAGATGTCTACGTGGCTAAGACATGGAAGACAGGCAATGCATTTAAATGGGTATACACGTTTCATTCCCAAGATCATCACAAAAAGAGTAATGCTGGTAGTTTTGGATTGAATCACAGCTGCAAAAACTCCTTAATGGTGGGTCAGATGCAAGTTTCCTGTTATTTATCCTCTGAACTTCGAGATGGTGGTTTTGACAACTCGATGGTAACAGAATTCGTGCTGTACGATGCTGCACGTGCTAGACAAAGTACTGCATCCCAAGGAAGTTGTGACTCTATCCATGATGCTGTCAAACCTCCTAAAAGTTCTGATACGGGCTTAGTTGGGGAACCTTTCAGTGTAAATGATGGGACTCCTCTAGAAAAATTCAAATTTCAGCGAAAACATGCTTCTGAAAACTGTGATCATGGTTCTATAGATTCTTGCCCTTGGGATTCAGCAGATTTACATCCAGACCTGGAATCTGCAGCTATTGTAATGCAAATCCCATTTAGCAAAAGGGAGAGTTTGAAGTATAAAAGAGGAGATAAGACGAGTGGTAAATTGAACTCGGCCATACAAAACCTCTCTAAGATTGAACAAAGGAAAGAGGAACCTCCGCATCACACAACTCAAGAAACTCTGAAGGTGGTGATTCCCACTGGAAACCATGGTTTACCGACTGTTGAAAGCCAAGGCCCTTCCACGTTACTTGATCGATGGAGGTTGGGAGGTGGTTGTGACTGCGGTGGTTGGGATATGGGTTGTCCTCTACTAATTTTGGGCACTCATAGTAGCCACTGTGCTGAGAATCAAGCACACAAGGGGAAACAGACTTTTCATCTTTTTCATCAGGGAGCAAAGGATACCACTCCAGCATTAACCATGAATATTGTCAAAGATGGACAATATTCTGTTGATTTTCATGCGCGATTATCAACATTGCAAGCATTTTCCATTTGTGTTGCTATTTTACATGCGACTGAAGCCTGCAACGCTGTCCAGGTGGAGGAAACAAAAGAGTTGCAGCAATGTAATTCCTTAAAGGTGCTTCTTGAGGAGGAAGTAAAATTCTTGATTGATGCTGTCGCAATGGAGGAGAAGAAAAGAGAAACAAGAATGCTGAAGGAAACGCCGTCATCATATTTGTTCAATCCTCCGTTTTCTCCTATTGCTAGAGTTTAA 2289 40.93 MGQETELDFDSLCAVDLSPNTVLPSIPRRSSIKNRSTRKKLKHEDFVLSVKDDFTEIKFGGGHRSRKSNSSSLIEQEDNESKCFELNVEDDFTEIRIGRDHSSHKSNSPSLVELEDDKGLKRRSKYQSSEDIGKIEGMGIQGERRKIEISREDYTSWSSGIVDSLCSSDEEKPERRDLILSLDTKLNQPSVNKACMGPRSSDSFIEIYSGLENSETVSKDPSNQLGNVTGIRPLHNGKKLFKRDKVHALQKSFSAKVEMPSNHLPVESDLRFGHSPKVHISPFRKILDPFMKSKSVRSRFSHAVEAGRDKAIKAINLERDETSSTPKSSDSDSNFSNNDNLHNVVASSPVHLHGSLKLEKKHGMPFFEFSQSSPEDVYVAKTWKTGNAFKWVYTFHSQDHHKKSNAGSFGLNHSCKNSLMVGQMQVSCYLSSELRDGGFDNSMVTEFVLYDAARARQSTASQGSCDSIHDAVKPPKSSDTGLVGEPFSVNDGTPLEKFKFQRKHASENCDHGSIDSCPWDSADLHPDLESAAIVMQIPFSKRESLKYKRGDKTSGKLNSAIQNLSKIEQRKEEPPHHTTQETLKVVIPTGNHGLPTVESQGPSTLLDRWRLGGGCDCGGWDMGCPLLILGTHSSHCAENQAHKGKQTFHLFHQGAKDTTPALTMNIVKDGQYSVDFHARLSTLQAFSICVAILHATEACNAVQVEETKELQQCNSLKVLLEEEVKFLIDAVAMEEKKRETRMLKETPSSYLFNPPFSPIARV* 763
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1733274 1737893 - CsaV3_5G002810.1 Csa05g00281 528668

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00281 762 MobiDBLite consensus disorder prediction 464 486 - -
Csa05g00281 762 Pfam Domain of unknown function (DUF3527) 349 695 IPR021916 -
Csa05g00281 762 PANTHER DOMAIN PROTEIN, PUTATIVE (DUF3527)-RELATED 78 762 - -
Csa05g00281 762 PANTHER DOMAIN PROTEIN, PUTATIVE (DUF3527)-RELATED 6 71 - -
Csa05g00281 762 MobiDBLite consensus disorder prediction 318 340 - -
Csa05g00281 762 PANTHER EXPRESSED PROTEIN 78 762 - -
Csa05g00281 762 PANTHER EXPRESSED PROTEIN 6 71 - -
Csa05g00281 762 MobiDBLite consensus disorder prediction 110 130 - -
Csa05g00281 762 MobiDBLite consensus disorder prediction 315 340 - -
Csa05g00281 762 MobiDBLite consensus disorder prediction 99 130 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00281 - - - csv:101216494 1501.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01176 Csa-Chr3:9149726 Csa05g00281 Csa-Chr5:1733274 8.63E-26 dispersed
Csa05g00281 Csa-Chr5:1733274 Csa06g01457 Csa-Chr6:12374783 2.83E-23 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g322 . . . . . . . . . . Cma02g01453 Cma15g01226 Car02g01219 Car15g01106 . . Cpe05g00334 . . . . . . . . . . . . . . Cone8ag0305 . Cone6ag0779 Cone9ag0784 . Csa05g00281 Chy09g01228 . . . . . . . . . . Cmo02g01488 Cmo15g01291 . . . . . Cpe13g00157 Bhi12g00260 . . . . . . Cla01g00265 Cam01g0272 Cec01g0265 Cco01g0280 Clacu01g0272 Cmu01g0260 Cre09g2248 Lsi09g00260 . . Cme09g01763
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007949 0 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 0 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00281 Csa_Chr05 FPKM 0.641386 0.578405 0.602282 0.728522 5.019664 6.536497 4.781471 0.0 0.0 0.0