Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00286 ATGGGGAAAGGAAGACCAAGAGCTGTGGAAAAGGGGGTAATAGGGCAGAATTTGAGTGTATGTCCATCAACTTCATCGAACATACCATCTGGGCCTGTGTATCATCCAACTGAAGATGAATTTAGAGACCCATTGGAGTATATATATAAGATCAGACCCGAGGCTGAGCCGTATGGGATTTGTAGGATAGTGCCTCCCAAGAACTGGAAACCTCCATTTGCATTGAAATTAGATTCTTTTACATTTCCCACAAAAACACAGGCCATTCATCAATTGCAGGTTAGACCTGCTGCCTGTGATTCAAAGACTTTTGAGCTTGAATATAATAGGTTTTTGGATGATCATTTTGGCAGAAAGATGAAGAAGAAGGTGGTTTTTGAGGGAGAGGAGTTGGATTTATGCAAGTTATTTAATGCAGTGAAGCGTTATGGTGGGTATGATAAAGTTGTTAAGGAGAAGAGGTGGGGTGAGGTTTTTAGGTTTGTTAGATCAACAAAGAAGATTTCGGAATGTGCTAAGCATGTGCTGTGTCAATTATACCGGGAACATCTATACGATTACGAGAATTATTATAGTAAACTGAATAAGGATGTCACGAAGAGTTCAAAAAGGAAAATACAAGATGAGAAGCTCAGTGAATTCTTGGCCGAATTTTCAACATCTAAAAGGAGGCGGCAGAACACTGACGATGGCAGAGCCAGCGTCTCAAAGTTAAAAGAAGAAGAGAATAATGATCAGATTTGTGAACAATGTAAAAGTGGATTGCATGGTGAAGTGATGCTTCTATGTGATAGGTGTGACAAGGGGTGGCACACATACTGTCTCTCACCTCCCTTGAAGCAAGTCCCACCTGGGAACTGGTACTGTTTAGATTGCTTGAATTCCGAGAAGGACAGTTTTGGATTTGTCCCTGGCAAATGTTTCTCCCTGGAAGCATTTAAGCGTATGGATTATAGGGCCAAGAAGAAATGGTTTGGCTCAGGGTCTGCTTCTAGAATGCAAATTGAGAAGAAATTTTGGGAAATTGTGGAAGGTTCATTTGGTGAAGTTGAAGTTAAATATGGCAGTGACTTGGACACATCAATTTATGGCAGTGGCTTTCCTCGTGAAAATGTTCAGAGACCAGAATCAATTGATGCTAAGGCTTGGGATGAATATTGCAATAGTCCGTGGAATCTCAATAACTTGCCCAAATTGAAAGGGTCCATGCTTAGAGCCATTCGTCACAATATTACTGGTGTTATGGTGCCCTGGTTGTATATTGGAATGCTATTTTCATCGTTCTGCTGGCATTTTGAAGACCATTGTTTCTATTCAATGAATTACCTGCACTGGGGTGACCCAAAATGCTGGTATAGTGTACCTGGTAGTGAAGCTACTGCTTTTGAGAAGGTTATGCGGAACAGCCTACCTGATCTTTTTGATGCACAACCTGATTTACTTTTTCAACTTGTTACCATGTTGAATCCATCCGTCTTACAAGAAAATGGCGTACCCGTTTATACAGTACAACAGGAGCCTGGAAATTTTGTTGTGACCTTCCCTAGATCTTTCCATGGGGGTTTTAATCTTGGATTAAATTGTGCTGAGGCCGTAAATTTTGCTCCTGCTGACTGGATGCCTTATGGTGGGTTTGGAGAAGAGTTGTATCAGCTTTATCACAAACCTGCTGTTTTTTCTCACGAGGAGCTTATCTGTGTGATAGCGAAGACGGATTGTAGTGACCGAGTGTCTCCTTACCTAAAGAAAGAGTTACTCAGGATTTATTCTAAGGAGAAAAGTTGGAGGGAACAACTTTGGAAAAATGGTGTAATAAGATCTTCTTCATTGCCTCCTCGAAAGTGTCCTGAATATATTAGTACAGAGGAGGATCCAACATGTGTTATATGTAAGAAGTACCTTTATCTTTCAGCTATAAGTTGCCGTTGTAGGAGATCTGCTTTTGTATGTTTGGAGCACTGGCAACACCTTTGTGAATGCAAGTACAGCAGGCGGCGCCTTTTGTATCGTTATACACTCGCTGAACTATATGATTTGATTGGTATAATTGATAGATGTGGTTCTGGGGATACAACTAAAAGTAAGGATTTTCGACAAGCAGGCTTATGCTACACTGAACGATGTACTTTGACAAAAAAGGTGAAAGGTGGTTGTGTCACTCTGTCCCAACTTGCAGAAAAATGGTTACTGCATTCAAATAAGGTTCTTCAAGATCCATTCTCAAATGAGGCATGTGTTAAGGCTTTGAGAGAAGCCGAGCAATTTCTTTGGGCTGGTCATGATATGGATCACGTCCGTGATGTTGTAAGAAACTTGGATGAAACTCAAAAGTGGGTTCAAGGCATTGGAGATTCCCTTTCTAAAATTGAAGCGTGGTCATGTGATCTTTCTGGAAGTTCAGAGAAAATTTGCTTGGATCATGTAAACAATTTGTTGAGTCTACCCTCAATATCATGTAACCATCCTGGGTATCTTAAGTTGAAGGATTATGTTGAAGAAGCAAAGATTTTGATACAAGATATTGATAATGCCTTATCAACATGCCCTGATGTTTCTGAATGGGAAATTTTGTACTCAAGAGTGTGTTCCTTTCCAATCCATATAGAAGAAAGTGAGAAGTTATCAGAAAACATATCAATAGCGAAGTCTTGCATAGAAAGTGTCAGAGAAATATTGGAGAAACAGCCTGCTGCTCTTGAGCTTGAGGTTCTTTACAAGTTGAAGTCTAAGATCTTGGAACTCGGAATCCAGCTTCCAGAGACAGAAATGGTGCTGGATTTAACAAGGCAAGCTGAACTACATCGTTCTAGATGTGCAGAAATTATGAATGGTCCCATGAACTTGAAGACCGTTGAACTATTCCTTCAAGAATCTAAGGGTTTTGCTGTTAATATACCTGAACTGAAACTTATAAGACAATATCATGACGATGTTGTCAAATGGCATGCTCGTCTTAATGCTGTTCTGGTTAATGTTCAAGAACGGGAGGATCAACATACTGTAATAGAAGAATTGAATTGCATCCTGAGAGATGGATTATCATTGACAATAAAAGTTGATGATGTACCTATAGTTGAGGTTGAGTTGAAGAAGGCTTCTGCCAGGGAAAAAGCTCAAAAGTTACAGGTTACCAAGGTTTCCATGGAATTCATACAGAAATTGATGAATGAGGCTGTAGAGTTAGAAATTGATAAGGAAAAATTGTTTGCTGATATTCGTGGAGTTCTCGATTCAGCAATGAGTTGGGAAAAGAGAGCTATGAATTTTCTAGCGCATGGGGCTGAGCTATCTGATTTTGAAGAGATTATAAGGTCTTCTGAAGGTTTACGTGTTATTCTACCTTCGCTTCATGATGTCAAGAATGAATTATCCTCGGCCAAGTCTTGGCTAAATATTTCAAAACCTTTCTTAGAGTATGTTCTCCCTTTGCCATCTGCACCAAGATCGCAGCTGAACGTCGAAACACTAAAGGAGTTGGTTTCTCAGTCAAAATTCCATAAGGTCGCTTTGGAAGAAAGCAGAGTGCTTGCTGCAGTCCTGAGAAAATGCGAGGATTGGAAAGATGGAGCAAACTCTTTATTGCAAGAAATTGATAATCTTTGGAATGTGGATGATATAGGGGATGGGCTGAGCAATTGTCTTATTCTTAAGATTAAACAATTAGTTGATAGAATCAATGCTATTATTACAGCCGGTATATCTCTTGGTTATGACTTTAGTGAGATTTCCCGACTTCAAAGTGCTTGTTCTACACTCATGTGGTGCAATAAAGTTCTTTCTCTTTGCGACGCTATTCCTTCTTATCAGGAGGTTGAGAGCTTGATGAAAGTTGAAGAGGACAATTCTTGTTTTTTTGCCTCTGGTGTTTTGTGGAGCTTATTGGTGGAAGGCGTCAAATGGCTGAAACAAGCCTTAGAGGTGATTCCTGGAACGTGCAATTCTAAACAAAGAAAGTTAAGCGATGCTGAGGAATTGCTTTCCAACTCTCAGAGAATCAAAATCAACTTCTCAGCCATGAATGGTCAACTTGTAAATGCTATTCAGAAGCACAAGTTGTGGCAGGAAGAAGTACGCCAATTTTTCATTATGGAGCGTGCTGAACGATCATGGGCTCTGTTATTAAAACTTAAGGAAGAAGGAGACATCGTTGCCTTCAATTGTTCAGAGCTACATTTAATCTTTTCTGAAGCTGAAAAGATTGAAAGGTGGAAGAAACAAATGGAGGAAATCATGAAGACGTCTTTTGGAGATGGAAGACCTCTGCTTGGTTGTCTAGGAGAGATAAAGAAATCACTGGACAGAGCCATATACATATATGAGAAACCGTTGCTCTACGCCGATCAGAACTTATGTGTTTGTTGCTCTAGCGATTCACAGGACCAGCATCTTTTTGCTTGCTCAGTATGTGAAGAAAGCTACCATTTGCAGTGCCTAGGGAAAGCAAGAGAAAAAACAAGCAATACCGATATCTTTATATGCCCTTATTGCTATAGCTCAAGGGGTGAATTATCAATTGATGAAAGTGGAGGTCCCTTGAGATATTTAGCAAATCGTCCTGACCTAGAAATGCTCACTAAGCTTAAATCTGATGCCGTGAACTTCTGTGTCTGGTTGGAAGAGGAAGATGTATTAAAGCAACTGATAGAGCAGGCTTTAGTATGCAAATCCCATTTGTCAGAAGTCTTGGACTTCTCATCACGTTGTCATGATAAAGATTTTAGTATTGCTTGCAAGAGGTTAACGGTAGTGTTAAAGGCTATGGACGTTGCAGGCATTAACGACCATGAAGGCAAGCGTGGCCTTGAGATGGAATTATTGAGGAACTCGTGGAGATTCAGAGTCAAGGAAGCTCTTGAAGGTTCTGAAAAACCAACAATGCAACAGGTCCTGGAGCTTCTGGAAGAGGGATCTGTGATAAGCATTCTGCCGGAAGATTGCTACAGACGGAAGCTTTTGGAAGTGAAGATTGTTTGCTCAAAGTGGAGAAGTCTTGCAAGGAAGATTTCAGCCGACTGTGGGGCACTTGAATTGGAGAAAGTTTTTGAATTGATTGAAGAGGGTGAAAATTTACCTGCATACCTCGAGAGGGAGCTCAAGTTATTAAGAAATCGAAGTATGCTTTATTGCATTTGCCGCAAGCCAAATGATCGCAGGCCAATGCTTGCTTGTGATATTTGTGAAGAATGGTATCACTTTGATTGTGTCAAGATAGAATCTACTCCCAAGGTATACATTTGCCCTGCTTGCAAACCGCAAGTTGACAATAAAATGTTGATTCAGCTATCTATGGAATATGAAAGTGAAACTAGTGCAAAATTCGTGGAGCCAAAGACCCCTTCTCCTCAACACACGAAGCGGAGATCGAAGCCTAAGAAAACAAAGCGAAATTTAGTTCGAAGTGTGACGGATTGCTATAGAGAATTCCGGTCCTCAAGTGGAATGGAATCCTTATGGTGGCAAAATAGGAAGCCTTTCAGGAGAGTAACCAGAAGGAGAGCAGAATTTGGAAGTCTTTCTCCATTTTCCCTCATAAAACAATAA 5541 40.35 MGKGRPRAVEKGVIGQNLSVCPSTSSNIPSGPVYHPTEDEFRDPLEYIYKIRPEAEPYGICRIVPPKNWKPPFALKLDSFTFPTKTQAIHQLQVRPAACDSKTFELEYNRFLDDHFGRKMKKKVVFEGEELDLCKLFNAVKRYGGYDKVVKEKRWGEVFRFVRSTKKISECAKHVLCQLYREHLYDYENYYSKLNKDVTKSSKRKIQDEKLSEFLAEFSTSKRRRQNTDDGRASVSKLKEEENNDQICEQCKSGLHGEVMLLCDRCDKGWHTYCLSPPLKQVPPGNWYCLDCLNSEKDSFGFVPGKCFSLEAFKRMDYRAKKKWFGSGSASRMQIEKKFWEIVEGSFGEVEVKYGSDLDTSIYGSGFPRENVQRPESIDAKAWDEYCNSPWNLNNLPKLKGSMLRAIRHNITGVMVPWLYIGMLFSSFCWHFEDHCFYSMNYLHWGDPKCWYSVPGSEATAFEKVMRNSLPDLFDAQPDLLFQLVTMLNPSVLQENGVPVYTVQQEPGNFVVTFPRSFHGGFNLGLNCAEAVNFAPADWMPYGGFGEELYQLYHKPAVFSHEELICVIAKTDCSDRVSPYLKKELLRIYSKEKSWREQLWKNGVIRSSSLPPRKCPEYISTEEDPTCVICKKYLYLSAISCRCRRSAFVCLEHWQHLCECKYSRRRLLYRYTLAELYDLIGIIDRCGSGDTTKSKDFRQAGLCYTERCTLTKKVKGGCVTLSQLAEKWLLHSNKVLQDPFSNEACVKALREAEQFLWAGHDMDHVRDVVRNLDETQKWVQGIGDSLSKIEAWSCDLSGSSEKICLDHVNNLLSLPSISCNHPGYLKLKDYVEEAKILIQDIDNALSTCPDVSEWEILYSRVCSFPIHIEESEKLSENISIAKSCIESVREILEKQPAALELEVLYKLKSKILELGIQLPETEMVLDLTRQAELHRSRCAEIMNGPMNLKTVELFLQESKGFAVNIPELKLIRQYHDDVVKWHARLNAVLVNVQEREDQHTVIEELNCILRDGLSLTIKVDDVPIVEVELKKASAREKAQKLQVTKVSMEFIQKLMNEAVELEIDKEKLFADIRGVLDSAMSWEKRAMNFLAHGAELSDFEEIIRSSEGLRVILPSLHDVKNELSSAKSWLNISKPFLEYVLPLPSAPRSQLNVETLKELVSQSKFHKVALEESRVLAAVLRKCEDWKDGANSLLQEIDNLWNVDDIGDGLSNCLILKIKQLVDRINAIITAGISLGYDFSEISRLQSACSTLMWCNKVLSLCDAIPSYQEVESLMKVEEDNSCFFASGVLWSLLVEGVKWLKQALEVIPGTCNSKQRKLSDAEELLSNSQRIKINFSAMNGQLVNAIQKHKLWQEEVRQFFIMERAERSWALLLKLKEEGDIVAFNCSELHLIFSEAEKIERWKKQMEEIMKTSFGDGRPLLGCLGEIKKSLDRAIYIYEKPLLYADQNLCVCCSSDSQDQHLFACSVCEESYHLQCLGKAREKTSNTDIFICPYCYSSRGELSIDESGGPLRYLANRPDLEMLTKLKSDAVNFCVWLEEEDVLKQLIEQALVCKSHLSEVLDFSSRCHDKDFSIACKRLTVVLKAMDVAGINDHEGKRGLEMELLRNSWRFRVKEALEGSEKPTMQQVLELLEEGSVISILPEDCYRRKLLEVKIVCSKWRSLARKISADCGALELEKVFELIEEGENLPAYLERELKLLRNRSMLYCICRKPNDRRPMLACDICEEWYHFDCVKIESTPKVYICPACKPQVDNKMLIQLSMEYESETSAKFVEPKTPSPQHTKRRSKPKKTKRNLVRSVTDCYREFRSSSGMESLWWQNRKPFRRVTRRRAEFGSLSPFSLIKQ* 1847
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1780186 1801358 + CsaV3_5G002860.1 Csa05g00286 528673

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00286 1846 Pfam JmjC domain, hydroxylase 418 534 IPR003347 -
Csa05g00286 1846 Coils Coil 1051 1071 - -
Csa05g00286 1846 Pfam ARID/BRIGHT DNA binding domain 109 188 IPR001606 GO:0003677
Csa05g00286 1846 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1443 1508 IPR013083 -
Csa05g00286 1846 Pfam PLU-1-like protein 872 1194 IPR013637 -
Csa05g00286 1846 Pfam PLU-1-like protein 765 1032 IPR013637 -
Csa05g00286 1846 ProSitePatterns Zinc finger PHD-type signature. 1709 1749 IPR019786 -
Csa05g00286 1846 ProSiteProfiles JmjN domain profile. 31 72 IPR003349 -
Csa05g00286 1846 SUPERFAMILY FYVE/PHD zinc finger 235 296 IPR011011 -
Csa05g00286 1846 SMART JmjN_1 30 71 IPR003349 -
Csa05g00286 1846 ProSitePatterns Zinc finger PHD-type signature. 248 292 IPR019786 -
Csa05g00286 1846 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1695 1751 IPR013083 -
Csa05g00286 1846 SUPERFAMILY ARID-like 81 199 IPR036431 GO:0003677
Csa05g00286 1846 PANTHER LYSINE-SPECIFIC DEMETHYLASE 24 1075 - -
Csa05g00286 1846 Gene3D - 96 202 IPR036431 GO:0003677
Csa05g00286 1846 SUPERFAMILY Clavaminate synthase-like 340 568 - -
Csa05g00286 1846 ProSiteProfiles ARID domain profile. 98 192 IPR001606 GO:0003677
Csa05g00286 1846 Pfam C5HC2 zinc finger 627 678 IPR004198 -
Csa05g00286 1846 Coils Coil 1024 1044 - -
Csa05g00286 1846 Gene3D Cupin 21 535 - -
Csa05g00286 1846 ProSiteProfiles Zinc finger PHD-type profile. 1448 1499 IPR019787 -
Csa05g00286 1846 ProSiteProfiles JmjC domain profile. 385 551 IPR003347 -
Csa05g00286 1846 SMART PHD_3 1708 1750 IPR001965 -
Csa05g00286 1846 SMART PHD_3 247 293 IPR001965 -
Csa05g00286 1846 SMART PHD_3 1450 1497 IPR001965 -
Csa05g00286 1846 SMART cupin_9 385 551 IPR003347 -
Csa05g00286 1846 SMART bright_3 99 193 IPR001606 GO:0003677
Csa05g00286 1846 SUPERFAMILY FYVE/PHD zinc finger 1703 1755 IPR011011 -
Csa05g00286 1846 SUPERFAMILY FYVE/PHD zinc finger 1447 1501 IPR011011 -
Csa05g00286 1846 ProSiteProfiles Zinc finger PHD-type profile. 245 295 IPR019787 -
Csa05g00286 1846 MobiDBLite consensus disorder prediction 1770 1796 - -
Csa05g00286 1846 Pfam PHD-finger 247 294 IPR019787 -
Csa05g00286 1846 Pfam PHD-finger 1708 1751 IPR019787 -
Csa05g00286 1846 SMART ARID_2 95 188 - -
Csa05g00286 1846 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 212 299 IPR013083 -
Csa05g00286 1846 PANTHER LYSINE-SPECIFIC DEMETHYLASE LID 24 1075 - -
Csa05g00286 1846 CDD PHD_RSF1 248 292 - -
Csa05g00286 1846 Pfam jmjN domain 32 65 IPR003349 -
Csa05g00286 1846 CDD PHD_SF 1451 1496 - -
Csa05g00286 1846 CDD ARID 100 188 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00286 K11446 KDM5, JARID1; [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67] - csv:101216734 3760.69
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02674 Csa-Chr4:25980637 Csa05g00286 Csa-Chr5:1780186 3.62E-07 dispersed
Csa05g00029 Csa-Chr5:137974 Csa05g00286 Csa-Chr5:1780186 6.28E-12 dispersed
Csa05g00286 Csa-Chr5:1780186 Csa07g01613 Csa-Chr7:16647690 6.66E-09 dispersed
Csa07g01116 Csa-Chr7:10880062 Csa05g00286 Csa-Chr5:1780186 6.91E-06 dispersed
Csa07g01898 Csa-Chr7:18883264 Csa05g00286 Csa-Chr5:1780186 6.47E-10 dispersed
Csa05g00286 Csa-Chr5:1780186 Csa03g00140 Csa-Chr3:1095869 1.09E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g327 . . . . . . . Bma14g00076 . . . Cma15g01224 . Car15g01104 . . . . . . . . . . . . . . . . . Cone8ag0485 Cone12ag0310 . . . Csa05g00286 Chy09g01220 . . . . . . . . . . . Cmo15g01289 Cma06g00632 . Car06g00566 . . Cpe13g00159 Bhi12g00252 . . . . . . . . . . . . . . . . Cme09g01757
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010126 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31675 PF08429 PLU-1 8.70E-24 No_clan Csa TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00286 Csa_Chr05 FPKM 9.608764 10.89675 3.954423 3.60689 5.000886 4.723538 5.191506 4.821371 4.271521 5.092421