Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Csa05g00288 | ATGGATGGGAGGGAAGGCATGGCATTGTCTGGTGGCTCTGCTTCTTATTACATACATAGGGGAGGAGGGGTTGGTGGCTCTGGATCGGGGCTTCCTACGGCTGGATCACATGCCTCCCCTGTATTCCGGCCGATGGCTAACCAGGGTGTTTTGTCTCACTCAAATCTCAGAGGCAACTCAGTTGGATCAACGTATACTGTTGAGCCATCACATTCGAACTATCTTCGTGGGATGGGTATCAATGTCTCAGCTGGAGTGAACTCTAGTGAACCTGTAAAGAAGAAGAGAGGGAGACCCCGGAAATATGCCCCAGATGGGCAGGTCTCGTTGGGTTTGTCTCCCATGTCTGCTGGTTCTAAGCTCACTCCAGGTTCGAATTCGTCCACCCCCAGACGACGTCGGGGGCGGCCACCTGGTTCTGGGAGGAAACAACAATTAGCTCTCCTTGGTGATTGGATGAACAATTCGGCTGGACTAGCCTTTGCCCCACATGTTATTCACGTCGGAGCTGGAGAAGACATTGTAGCAAAAGTATTGTCATTCGCACAACAGAGGCCAAGGGCTGTTTGTGTCTTGTCTGGCAATGGCACTGTTTCTTCCGTAACACTACGTCAGCCTGCATCTACTGGCGTGAGCGTCACATATGAGGGTCATTTCCAGATATTGTGCTTATCTGGTTCTTACTTGGTCGCTGAAGATGGCGGTCCTCGAAGTAGGACGGGTGGTATTAGTGTTTCCCTTGCCAGTCCTGATGGTCATGTTATTGGTGGCGGTGTTGCTGTTCTTACGGCAGCTGGCCCTGTTCAGGTAGTTGTATGTAGTTTTGTTTATGGTCCAAAGATAAAAAACAAGCAGGTGGCTGGTCCGAAAAGCAATGATGGTTCTGGACATGAGCACCACGATAATTTGGTTTCGCCCACGAGTGCCCCATCTACTCAAACCTACAATCCATCTTCAATGGGTGTTTGGCCCGGTTCCCGTTCGGTCGATGTGAGAAACCCTCGTACTGGAATTGACTTGACGCGAGGATGA | 1032 | 50.68 | MDGREGMALSGGSASYYIHRGGGVGGSGSGLPTAGSHASPVFRPMANQGVLSHSNLRGNSVGSTYTVEPSHSNYLRGMGINVSAGVNSSEPVKKKRGRPRKYAPDGQVSLGLSPMSAGSKLTPGSNSSTPRRRRGRPPGSGRKQQLALLGDWMNNSAGLAFAPHVIHVGAGEDIVAKVLSFAQQRPRAVCVLSGNGTVSSVTLRQPASTGVSVTYEGHFQILCLSGSYLVAEDGGPRSRTGGISVSLASPDGHVIGGGVAVLTAAGPVQVVVCSFVYGPKIKNKQVAGPKSNDGSGHEHHDNLVSPTSAPSTQTYNPSSMGVWPGSRSVDVRNPRTGIDLTRG* | 344 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 1809144 | 1815649 | + | CsaV3_5G002880.1 | Csa05g00288 | 528675 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Csa05g00288 | 343 | MobiDBLite | consensus disorder prediction | 301 | 323 | - | - | |
| Csa05g00288 | 343 | ProSiteProfiles | PPC domain profile profile. | 158 | 299 | IPR005175 | - | |
| Csa05g00288 | 343 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 | 1 | 343 | IPR039605 | GO:0003680 | |
| Csa05g00288 | 343 | MobiDBLite | consensus disorder prediction | 285 | 343 | - | - | |
| Csa05g00288 | 343 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 163 | 276 | IPR005175 | - | |
| Csa05g00288 | 343 | Gene3D | - | 163 | 287 | - | - | |
| Csa05g00288 | 343 | MobiDBLite | consensus disorder prediction | 112 | 133 | - | - | |
| Csa05g00288 | 343 | PANTHER | AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN | 1 | 343 | - | - | |
| Csa05g00288 | 343 | MobiDBLite | consensus disorder prediction | 85 | 143 | - | - | |
| Csa05g00288 | 343 | CDD | DUF296 | 163 | 275 | IPR005175 | - | |
| Csa05g00288 | 343 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 161 | 276 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Csa05g00288 | Csa-Chr5:1809144 | Csa06g02206 | Csa-Chr6:19888856 | 2.35E-58 | dispersed | |
| Csa02g00279 | Csa-Chr2:1909716 | Csa05g00288 | Csa-Chr5:1809144 | 1.26E-44 | transposed | |
| Csa05g00288 | Csa-Chr5:1809144 | Csa06g00046 | Csa-Chr6:313734 | 1.88E-90 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Csa05g00288 | - | - | csv:101219973 | 670.618 |