Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00288 ATGGATGGGAGGGAAGGCATGGCATTGTCTGGTGGCTCTGCTTCTTATTACATACATAGGGGAGGAGGGGTTGGTGGCTCTGGATCGGGGCTTCCTACGGCTGGATCACATGCCTCCCCTGTATTCCGGCCGATGGCTAACCAGGGTGTTTTGTCTCACTCAAATCTCAGAGGCAACTCAGTTGGATCAACGTATACTGTTGAGCCATCACATTCGAACTATCTTCGTGGGATGGGTATCAATGTCTCAGCTGGAGTGAACTCTAGTGAACCTGTAAAGAAGAAGAGAGGGAGACCCCGGAAATATGCCCCAGATGGGCAGGTCTCGTTGGGTTTGTCTCCCATGTCTGCTGGTTCTAAGCTCACTCCAGGTTCGAATTCGTCCACCCCCAGACGACGTCGGGGGCGGCCACCTGGTTCTGGGAGGAAACAACAATTAGCTCTCCTTGGTGATTGGATGAACAATTCGGCTGGACTAGCCTTTGCCCCACATGTTATTCACGTCGGAGCTGGAGAAGACATTGTAGCAAAAGTATTGTCATTCGCACAACAGAGGCCAAGGGCTGTTTGTGTCTTGTCTGGCAATGGCACTGTTTCTTCCGTAACACTACGTCAGCCTGCATCTACTGGCGTGAGCGTCACATATGAGGGTCATTTCCAGATATTGTGCTTATCTGGTTCTTACTTGGTCGCTGAAGATGGCGGTCCTCGAAGTAGGACGGGTGGTATTAGTGTTTCCCTTGCCAGTCCTGATGGTCATGTTATTGGTGGCGGTGTTGCTGTTCTTACGGCAGCTGGCCCTGTTCAGGTAGTTGTATGTAGTTTTGTTTATGGTCCAAAGATAAAAAACAAGCAGGTGGCTGGTCCGAAAAGCAATGATGGTTCTGGACATGAGCACCACGATAATTTGGTTTCGCCCACGAGTGCCCCATCTACTCAAACCTACAATCCATCTTCAATGGGTGTTTGGCCCGGTTCCCGTTCGGTCGATGTGAGAAACCCTCGTACTGGAATTGACTTGACGCGAGGATGA 1032 50.68 MDGREGMALSGGSASYYIHRGGGVGGSGSGLPTAGSHASPVFRPMANQGVLSHSNLRGNSVGSTYTVEPSHSNYLRGMGINVSAGVNSSEPVKKKRGRPRKYAPDGQVSLGLSPMSAGSKLTPGSNSSTPRRRRGRPPGSGRKQQLALLGDWMNNSAGLAFAPHVIHVGAGEDIVAKVLSFAQQRPRAVCVLSGNGTVSSVTLRQPASTGVSVTYEGHFQILCLSGSYLVAEDGGPRSRTGGISVSLASPDGHVIGGGVAVLTAAGPVQVVVCSFVYGPKIKNKQVAGPKSNDGSGHEHHDNLVSPTSAPSTQTYNPSSMGVWPGSRSVDVRNPRTGIDLTRG* 344
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 1809144 1815649 + CsaV3_5G002880.1 Csa05g00288 528675
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00288 343 MobiDBLite consensus disorder prediction 301 323 - -
Csa05g00288 343 ProSiteProfiles PPC domain profile profile. 158 299 IPR005175 -
Csa05g00288 343 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 343 IPR039605 GO:0003680
Csa05g00288 343 MobiDBLite consensus disorder prediction 285 343 - -
Csa05g00288 343 Pfam Plants and Prokaryotes Conserved (PCC) domain 163 276 IPR005175 -
Csa05g00288 343 Gene3D - 163 287 - -
Csa05g00288 343 MobiDBLite consensus disorder prediction 112 133 - -
Csa05g00288 343 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 343 - -
Csa05g00288 343 MobiDBLite consensus disorder prediction 85 143 - -
Csa05g00288 343 CDD DUF296 163 275 IPR005175 -
Csa05g00288 343 SUPERFAMILY AF0104/ALDC/Ptd012-like 161 276 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00288 Csa-Chr5:1809144 Csa06g02206 Csa-Chr6:19888856 2.35E-58 dispersed
Csa02g00279 Csa-Chr2:1909716 Csa05g00288 Csa-Chr5:1809144 1.26E-44 transposed
Csa05g00288 Csa-Chr5:1809144 Csa06g00046 Csa-Chr6:313734 1.88E-90 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00288 - - csv:101219973 670.618