Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00290 ATGTTCTGTTCCTCATCAATTCGCTCTCTTCTCACAAGAAATTTGTTCTTCAGCGTTCGATCTTTATCTTCTTCATCTCTGCTTTCTAATACCCGATTTAACCACGATTCCAAGCAGATCCTTTTGCATATTACACAGTTTTCTTCTCTTACTCGTTTCGTTTCACCGATCAATTCACGTTCTTCGCTTATCGCCTCGTTTTTTACTCGCTTCGATCATACTATGGCCACCCCTTCCAAGACTTCAGTCCATGACTTCACCGTCAAGGATGCTAAAGGAAAAGATGTTGACCTCAGCGCTTACAAAGGAAAGGTCCTTTTGATTGTCAATGTCGCTTCACAATGTGGCTTGACTAATTCGAATTATACTGAACTGAGTCAGCTGTATGAAAAATACAAGGGCCACGGATTTGAGATTCTTGCATTTCCGTGCAACCAATTTGGAAGCCAGGAACCAGGATCCAACGAAGAGATTGTGCAGTTTGCTTGCACCCGTTTCAAGGCTGAGTACCCCATTTTTGACAAGGTCGATGTGAATGGAAACAATGCTGCTCCTCTGTACAAATTCTTGAAGTCAAGCAAAGGCGGGCTCTTTGGAGACGCCATCAAGTGGAACTTCTCCAAGTTCTTGGTCGACAAAGATGGAAACGTCGTCGATCGTTATGCCCCAACAACTTCCCCACTCAGCATTGAGAAGGATTTGAAGAAACTGCTGGGAGTTGCTTAA 726 43.66 MFCSSSIRSLLTRNLFFSVRSLSSSSLLSNTRFNHDSKQILLHITQFSSLTRFVSPINSRSSLIASFFTRFDHTMATPSKTSVHDFTVKDAKGKDVDLSAYKGKVLLIVNVASQCGLTNSNYTELSQLYEKYKGHGFEILAFPCNQFGSQEPGSNEEIVQFACTRFKAEYPIFDKVDVNGNNAAPLYKFLKSSKGGLFGDAIKWNFSKFLVDKDGNVVDRYAPTTSPLSIEKDLKKLLGVA* 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1819776 1822277 - CsaV3_5G002900.1 Csa05g00290 528677

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00290 241 SUPERFAMILY Thioredoxin-like 82 238 IPR036249 -
Csa05g00290 241 ProSitePatterns Glutathione peroxidases signature 2. 140 147 IPR029760 -
Csa05g00290 241 Gene3D Glutaredoxin 74 239 - -
Csa05g00290 241 PRINTS Glutathione peroxidase family signature 101 118 IPR000889 GO:0004602|GO:0006979
Csa05g00290 241 PRINTS Glutathione peroxidase family signature 137 153 IPR000889 GO:0004602|GO:0006979
Csa05g00290 241 PRINTS Glutathione peroxidase family signature 202 211 IPR000889 GO:0004602|GO:0006979
Csa05g00290 241 ProSitePatterns Glutathione peroxidases active site. 103 118 IPR029759 -
Csa05g00290 241 CDD GSH_Peroxidase 82 234 IPR000889 GO:0004602|GO:0006979
Csa05g00290 241 ProSiteProfiles Thioredoxin domain profile. 77 239 IPR013766 -
Csa05g00290 241 Pfam Glutathione peroxidase 83 191 IPR000889 GO:0004602|GO:0006979
Csa05g00290 241 PANTHER GLUTATHIONE PEROXIDASE 47 240 IPR000889 GO:0004602|GO:0006979
Csa05g00290 241 ProSiteProfiles Glutathione peroxidase profile. 73 241 IPR000889 GO:0004602|GO:0006979
Csa05g00290 241 PANTHER GLUTATHIONE PEROXIDASE 47 240 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00290 K00432 gpx, btuE, bsaA; glutathione peroxidase [EC:1.11.1.9] - csv:101220688 457.603
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00318 Csa-Chr4:1962421 Csa05g00290 Csa-Chr5:1819776 2.85E-84 dispersed
Csa04g02619 Csa-Chr4:25632548 Csa05g00290 Csa-Chr5:1819776 9.39E-87 dispersed
Csa05g00290 Csa-Chr5:1819776 Csa06g02303 Csa-Chr6:20721663 2.17E-81 dispersed
Csa05g00289 Csa-Chr5:1813050 Csa05g00290 Csa-Chr5:1819776 4.66E-92 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g331 . . . . . . . . . . Cma02g01461 Cma15g01220 Car02g01226 Car15g01101 . . . . . . . . . . . . . . . . . Cone8ag0312 . Cone6ag0772 Cone9ag0778 . Csa05g00290 Chy09g01216 . . . . Bda09g00043 . . . Bma12g00376 . Cmo02g01496 Cmo15g01286 . . . . . . Bhi12g00244 . . . . . . Cla01g00272 Cam01g0281 Cec01g0273 Cco01g0288 Clacu01g0280 Cmu01g0268 Cre09g2241 Lsi09g00268 . . Cme09g01753
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000163 11 8 6 9 6 6 7 6 6 5 4 6 8 5 6 8 6 11 3 6 6 7 6 5 5 6 5 14 6 5 198
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00290 Csa_Chr05 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0