Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00291 ATGTTGAAGTTACCGCGGTGGAACCGATCGACGGCGGCGGCAACAGAGGAGATTACGAAAAATGCGACGGCTATTAACGACGACGAGGCCACGACGGCGGCGAAGGCGGTGGTATGCGTTAGCGGCATGAGTTGCTCTGCATGTGCTGTTTCTGTTGAGAATTCCATCAAACACCTTCCAGGCATTCTCGATGCTGCCGTCGACTTCTTGAACGATAGGGCTCAAATCCTCTATCTTCCCAATCTCACCGACGTAGAGACAATACTTCAAGCAATTGAAAATGCTGGATTTCAAGCTACAATATCAAAGGACGGGACTGATCATCGATCGAGAGAAGTATGTCGAATCCGAGTAAATGGAATGGGCTGCAATTCTTGCTCTTCCATGGTAGAATCAGTTTTGGAAGCAATGTATGGAGTACAAAAGGCTCACATTGCTTTGTTGAATGAGGAAGCAGAAGTTCATTATGATCCAAAGGTTGTTAATTGCAATCAGTTCATTATAGCCATACAAGACATTGGATTTGAAGCATTACCTATCACCATTGGGGAACACGTTACCAAGATTGACCTTAAGATTGATGGTATGCACAATGAAAACTCAACAACAAAAGTTAAAGAGTCCCTCGAATTGGTCCTGGGAATTGACGATGTCAATATCGATACGACATTAAGCAAAGTTACTATATCATATAGGCCTGATATAATAGGACCTAGAACTTTCATTGAAATACTTGAGTCTATCAAATCTGAGCATTTCAAAGTGACGATATATCCCGAAGATACGGAACGAGAAACTCGTAAGCAGAAAGAAATTAAACAACATTATAAATACCTTATATGGAGCTCTGCTCTTTCTATACCTGTTTTCTTAACTTCTATGGTTTTCATGTATATACCTGGAATCAAACAGACTTTAGATATCAAAGTTGTCAATATGATGAACGTCGGACATATTATCAGATGGAATTTATCAACTCCGGTGCAGTTCGTCGTAGGTTCGAGATTCTACTTTGGATCGTACAAAGCATTGCGTCGAGGTTCTGCCAACATGGATGTATTGGTTACTTTAGGAACAAATGCAGCTTATTTCTATTCTGTTTATATAGTGTTAAGAGCAGCTACGTCTCCTACTTTCAATGGTACTGATTTCTTTGAAACCAGTTCAATGTTAATTACATTCATTCTACTTGGTAAGTATTTGGAGGTTTTAGCAAAAGGAAAGACCTCTGATGCTATTGCCAAGCTTAAACACTTGGCTCCCGAGACGGCAACACTCTTGACTTTAGATCTTCATGGAAATGTGATCAATGAAGCGGAAATCAGTAGTGAGTTGATCCAAAAGAATGATGTTATTAAGATTACACCAGGTGCTAGAGTAGCTTCTGATGGTCTTGTCGTATGGGGAGAAAGCCATGTTAACGAGAGTATGATCACAGGAGAAGCGAAACCAGTAACGAAAAGGACGGGGGATAAGGTGATAGGAGGAACTGTGAATGAAAATGGGGTATTGCATATAAAGGCAACTCATGTTGGATCAGAGAGTTCTTTATCGCAAATCGTTCGACTCGTCGAATCATCTCAATTGGCAAAAGCTCCTATTCAAAAATTTGCTGACCATATCTCTAAATATTTTGTGCCTTTGGTAATTTTACTTTCTTTTCTCACCTGGATTGCTTGGTTTTTGGCTGGAAAGTTGCATCTCTATCCTAAATCATGGTTGCCTTCTTCAATGGACAGTTTCGAGTTGGCTCTCCAATTTGGGATTTCTGTTATGGTCATAGCTTGCCCTTGTGCTCTCGGCCTTGCCACCCCGACTGCCATGATGGTCGGTACCGGCGTAGGTGCATCTCAAGGTGTACTAATAAAAGGAGGTCGAGCATTAGAATTTGCTCATAAGGTGAGTTGCATTGTGTTTGATAAGACAGGAACTCTAACAATTGGAAAGCCAGTGGTTGTAAATGTAAAACTTATGAACACTACAGTACTTGAAGAACTACTTGAACTCACTGCAGCAACCGAGGTTAACAGTGAGCACCCAGTAGCCAAGGCCATTGTTGAATATGCCAAACAATTCAAGAAAGAACAAAATCCCCTTTGGCCAGAAGCTCAAGAATTCATATCCATTCCTGGCCATGGAGTAGAAGCCATAGTAAAAAACAAGAAAATAATAGTTGGAAACAAGAGCTTGATGATGAACAATGACATCGAAATCCCAAGGGAAGTGGAAATGTTCCTTGTAGATGCCGAAGGTATGGCGCAAACTGCGGTCTTAGTGGCGATAGATCGAATGGTGTCAGGAGTTGTCACAGTGTCGGATCCGTTGAAACCGGGTACCAAAGAAGTTATCTCCATTCTCAAGGCTATGGAAGTGAAGAGCATCATGATAACAGGTGACAACTGGGGCACTGCAAATTCCATTGCTAAAGAAGTTGGAATTGAAACAATCATTGCTGAGGCTAAGCCTCAACAAAAAGCAGAAGAAGTGAAGAATCTTCAGACGGCGGGACACACAGTGGCAATGGTCGGAGACGGGATCAACGATTCACCTGCTCTAGTAGCAGCAGATGTCGGGATGGCAATCGGAGCCGGCACTGACATTGCAATTGAGGCAGCAGACATTGTTCTAATGAAAAATGACTTGCAAGATGTTATAACTGCCATTCATCTTTCAAGAAAAACCTTTGCTAAAATTCGTTTGAATTACATTTGGGCTTTAGGTTATAATCTTCTTGCCATACCGATCGCAGCAGGCGTCTTGTTCCCTTCGACTCGGTTTCGGCTACCACCGTGGATCGCTGGAGCTGCCATGGCAGCTTCTTCTGTTAGTGTGGTATGCAGTTCTTTGATGTTGAAGAAGTACAAAAGACCCAAGAAGCTTGATGAAATTGAGATTCAAATGAATGGAATAGTGGTTGAATGA 2922 41.92 MLKLPRWNRSTAAATEEITKNATAINDDEATTAAKAVVCVSGMSCSACAVSVENSIKHLPGILDAAVDFLNDRAQILYLPNLTDVETILQAIENAGFQATISKDGTDHRSREVCRIRVNGMGCNSCSSMVESVLEAMYGVQKAHIALLNEEAEVHYDPKVVNCNQFIIAIQDIGFEALPITIGEHVTKIDLKIDGMHNENSTTKVKESLELVLGIDDVNIDTTLSKVTISYRPDIIGPRTFIEILESIKSEHFKVTIYPEDTERETRKQKEIKQHYKYLIWSSALSIPVFLTSMVFMYIPGIKQTLDIKVVNMMNVGHIIRWNLSTPVQFVVGSRFYFGSYKALRRGSANMDVLVTLGTNAAYFYSVYIVLRAATSPTFNGTDFFETSSMLITFILLGKYLEVLAKGKTSDAIAKLKHLAPETATLLTLDLHGNVINEAEISSELIQKNDVIKITPGARVASDGLVVWGESHVNESMITGEAKPVTKRTGDKVIGGTVNENGVLHIKATHVGSESSLSQIVRLVESSQLAKAPIQKFADHISKYFVPLVILLSFLTWIAWFLAGKLHLYPKSWLPSSMDSFELALQFGISVMVIACPCALGLATPTAMMVGTGVGASQGVLIKGGRALEFAHKVSCIVFDKTGTLTIGKPVVVNVKLMNTTVLEELLELTAATEVNSEHPVAKAIVEYAKQFKKEQNPLWPEAQEFISIPGHGVEAIVKNKKIIVGNKSLMMNNDIEIPREVEMFLVDAEGMAQTAVLVAIDRMVSGVVTVSDPLKPGTKEVISILKAMEVKSIMITGDNWGTANSIAKEVGIETIIAEAKPQQKAEEVKNLQTAGHTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKNDLQDVITAIHLSRKTFAKIRLNYIWALGYNLLAIPIAAGVLFPSTRFRLPPWIAGAAMAASSVSVVCSSLMLKKYKRPKKLDEIEIQMNGIVVE* 974
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1823864 1829914 - CsaV3_5G002910.1 Csa05g00291 528678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00291 973 PRINTS Copper-transporting ATPase 1 signature 35 60 - -
Csa05g00291 973 PRINTS Copper-transporting ATPase 1 signature 61 84 - -
Csa05g00291 973 PRINTS Copper-transporting ATPase 1 signature 90 110 - -
Csa05g00291 973 PRINTS Copper-transporting ATPase 1 signature 136 157 - -
Csa05g00291 973 Gene3D - 406 528 - -
Csa05g00291 973 Gene3D - 723 773 IPR023299 GO:0000166
Csa05g00291 973 Gene3D - 645 722 IPR023299 GO:0000166
Csa05g00291 973 ProSitePatterns Heavy-metal-associated domain. 118 148 IPR017969 GO:0046872
Csa05g00291 973 CDD HMA 40 100 IPR006121 GO:0046872
Csa05g00291 973 Pfam haloacid dehalogenase-like hydrolase 635 856 - -
Csa05g00291 973 CDD P-type_ATPase_Cu-like 279 938 - -
Csa05g00291 973 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 391 924 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa05g00291 973 PANTHER ATP7, ISOFORM B 21 962 - -
Csa05g00291 973 SUPERFAMILY HMA, heavy metal-associated domain 35 103 IPR036163 GO:0046872
Csa05g00291 973 ProSitePatterns E1-E2 ATPases phosphorylation site. 640 646 IPR018303 -
Csa05g00291 973 Gene3D - 111 179 - -
Csa05g00291 973 PRINTS P-type cation-transporting ATPase superfamily signature 474 488 - -
Csa05g00291 973 PRINTS P-type cation-transporting ATPase superfamily signature 638 652 - -
Csa05g00291 973 PRINTS P-type cation-transporting ATPase superfamily signature 767 778 - -
Csa05g00291 973 PRINTS P-type cation-transporting ATPase superfamily signature 789 799 - -
Csa05g00291 973 PRINTS P-type cation-transporting ATPase superfamily signature 842 861 - -
Csa05g00291 973 PRINTS P-type cation-transporting ATPase superfamily signature 865 877 - -
Csa05g00291 973 ProSiteProfiles Heavy-metal-associated domain profile. 188 257 IPR006121 GO:0046872
Csa05g00291 973 SUPERFAMILY Calcium ATPase, transmembrane domain M 383 913 IPR023298 -
Csa05g00291 973 CDD HMA 116 177 IPR006121 GO:0046872
Csa05g00291 973 PANTHER COPPER-TRANSPORTING ATPASE HMA5-RELATED 21 962 - -
Csa05g00291 973 Gene3D - 33 107 - -
Csa05g00291 973 ProSitePatterns Heavy-metal-associated domain. 40 69 IPR017969 GO:0046872
Csa05g00291 973 SFLD Haloacid Dehalogenase 620 894 - -
Csa05g00291 973 ProSiteProfiles Heavy-metal-associated domain profile. 113 179 IPR006121 GO:0046872
Csa05g00291 973 SUPERFAMILY HAD-like 637 948 IPR036412 -
Csa05g00291 973 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 351 951 IPR027256 GO:0006812|GO:0016021|GO:0019829
Csa05g00291 973 SUPERFAMILY HMA, heavy metal-associated domain 183 249 IPR036163 GO:0046872
Csa05g00291 973 Gene3D - 188 257 - -
Csa05g00291 973 Gene3D - 605 899 IPR023214 -
Csa05g00291 973 SFLD p-type atpase 620 894 IPR044492 -
Csa05g00291 973 SUPERFAMILY Calcium ATPase, transduction domain A 439 524 IPR008250 -
Csa05g00291 973 CDD HMA 190 256 IPR006121 GO:0046872
Csa05g00291 973 Pfam Heavy-metal-associated domain 116 176 IPR006121 GO:0046872
Csa05g00291 973 Pfam Heavy-metal-associated domain 191 248 IPR006121 GO:0046872
Csa05g00291 973 Pfam Heavy-metal-associated domain 38 97 IPR006121 GO:0046872
Csa05g00291 973 ProSiteProfiles Heavy-metal-associated domain profile. 35 101 IPR006121 GO:0046872
Csa05g00291 973 SUPERFAMILY HMA, heavy metal-associated domain 112 183 IPR036163 GO:0046872
Csa05g00291 973 Pfam E1-E2 ATPase 437 616 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01427 Csa-Chr2:13698624 Csa05g00291 Csa-Chr5:1823864 0 dispersed
Csa04g01102 Csa-Chr4:9299082 Csa05g00291 Csa-Chr5:1823864 0 dispersed
Csa05g00291 Csa-Chr5:1823864 Csa06g03896 Csa-Chr6:30800528 0 dispersed
Csa05g00291 Csa-Chr5:1823864 Csa01g02172 Csa-Chr1:18849770 5.76E-71 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00291 K17686 - csv:101220448 1863.2