Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00294 ATGAACGTGGAGGGTCAAAATAAGAAGAAAGAGTATGTTGCCGATATTTCCTCCATAAAGGAAGCCCGGATACGTATTCGACCTTTCATCCATCAAACCCAAGTTTTTGCATCTGAAACTATCAATGCTGCTTCAGGAAAACAATTTTTCTTCAAATGTGAATGTTTCCAGAAGGGTGGAGCTTTTAAATTCAGAGGTGCCTGCAATGCTATATATTCACTTGATGAGGGCGAGGCTGCTAAAGGGGTTGTGACACATAGCAGTGGCAACCATGCTGCAGCTTTGTCTTTGGCTGCAAAACTGCGAGGAATCCCTGCATATATAGTTATACCAGAAAATGCTCCCAAATGTAAAGTTGAAAATGTGATACGTTATGGTGGTCAGATTATTTGGAGCAAAAGCGCAATACAGTCAAGGGAATCGGTTGCTGCGAGGGTTATGCAAGAAACTGGTGCACTTCTCATACACCCATATAATGATGGGCGCATAATAAGTGGGCAAGGTACCATCTCGTTGGAGCTTCTGGAACAAGTCCCACAATTAGACACTTTAATCGTTCCCATAAGTGGTGGTGATTTGATATCAGGAATTTCAGTGGCTGCAAAGGCCATCAATCCTGCCATCCGGATTTTTGCTGCAGAACCTAAGGGAGCTAATGATGCAGCCATGTCAAAAGCAGCTGGTAAGATAGTAACACTACCAGAGACCACCACCATAGCCGATGGTGTTCGAGCTTTTCTCGACGACCTGACCTGGCCAATAGTAAGAGATTTGGTGGATGATGTAATAACTGTGGAGGACATAGAGATAGTTGAAGCAATGAGACTTTGTCTTGAAATTCTGAAAGTTGTTGTGGAACCAAGTGGGGCAATAGGTCTTGCTGCTGTTCTCTCTGATAGTTTCAAGCAAAACCCTTCATGGAAGGATTGCAACTCCATTGGCATTATACTTTCTGGAGGATTGGAGATTTTTTCTGAACTTTTTTCAGGTGTGCCGTTTCTTGCTGTTAAAATGAACGTGGAGAGTCAAAATAAGAAGAAAGAGTATGCTGCTGATATTTCCTCCATAAAGGAAGCCCGGATACGTATTCGACCTTTCATCCATCAAACCCCAGTTTTTTCATCTGAAACTATCAATGCTGCTTCAGGAAAACAACTTTTCTTCAAATGTGAATGTTTCCAGAAGGGTGGAGCTTTCAAATTCAGAGGTGCCTGCAATGCTATATATTCACTTGATGAGGGCGAGGCTGCTAAAGGGGTTGTGACACATAGCAGTGGCAACCATGCTGCAGCTTTGTCTTTGGCTGCAAAACTGCGCGGAATCCCTGCATATATAGTTATACCAGAAAATGCTCCAAAATGTAAAGTTGAAAATGTGATACGTTATGGTGGTCAGATTATTTGGAGCAAAAGCGCAATACAGTCAAGGGAATCGGTTGCTGCGAGGGTTATGCAAGAAACTGGTGCACTTCTCATACACCCATATAATGATGGGCGCATAATAAGTGGGCAAGGTACCATCTCGTTGGAGCTTCTGGAACAAGTCCCACAATTAGACACTTTAATCGTTCCCATAAGTGGTGGTGGTTTGATATCAGGAATTTCAGTGGCTGCAAAGGCCATCAATCCTGCCATCCGGATTTTTGCTGCAGAACCTAAGGGAGCTAATGATGCAGCCATGTCAAAAGCAGCTGGTAAGATAGTAACACTGCCAGAAACCACCACCATAGCCGATGGTCTTCGAGCTTTTCTCGGCAACCTGACCTGGCCAATAGTAAGAGATTTGGTGGATGATGTAATAACTGTGGAGGACACAGAGATAGTTGAAGCAATGAGACTTTGTCTTGAAATTCTGAAAGTTGTTGTGGAACCAAGTGGGGCAATAGGTCTTGCTGCTGTTCTCTCTGATAGTTTCAAGCAAAACCCTTCATGGAAGGATTGCAACTCCATTGGCATTATACTTTCTGGAGGTAATGTTGATCTTGGCATGCTTTGGAATTCTTACAAAAAATGA 2013 43.12 MNVEGQNKKKEYVADISSIKEARIRIRPFIHQTQVFASETINAASGKQFFFKCECFQKGGAFKFRGACNAIYSLDEGEAAKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPENAPKCKVENVIRYGGQIIWSKSAIQSRESVAARVMQETGALLIHPYNDGRIISGQGTISLELLEQVPQLDTLIVPISGGDLISGISVAAKAINPAIRIFAAEPKGANDAAMSKAAGKIVTLPETTTIADGVRAFLDDLTWPIVRDLVDDVITVEDIEIVEAMRLCLEILKVVVEPSGAIGLAAVLSDSFKQNPSWKDCNSIGIILSGGLEIFSELFSGVPFLAVKMNVESQNKKKEYAADISSIKEARIRIRPFIHQTPVFSSETINAASGKQLFFKCECFQKGGAFKFRGACNAIYSLDEGEAAKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPENAPKCKVENVIRYGGQIIWSKSAIQSRESVAARVMQETGALLIHPYNDGRIISGQGTISLELLEQVPQLDTLIVPISGGGLISGISVAAKAINPAIRIFAAEPKGANDAAMSKAAGKIVTLPETTTIADGLRAFLGNLTWPIVRDLVDDVITVEDTEIVEAMRLCLEILKVVVEPSGAIGLAAVLSDSFKQNPSWKDCNSIGIILSGGNVDLGMLWNSYKK* 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1844415 1854863 + CsaV3_5G002940.1 Csa05g00294 528681

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00294 670 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 16 303 IPR036052 -
Csa05g00294 670 Gene3D - 362 660 IPR036052 -
Csa05g00294 670 CDD Thr-dehyd 16 320 - -
Csa05g00294 670 Pfam Pyridoxal-phosphate dependent enzyme 364 637 IPR001926 -
Csa05g00294 670 Pfam Pyridoxal-phosphate dependent enzyme 27 300 IPR001926 -
Csa05g00294 670 Gene3D - 399 495 IPR036052 -
Csa05g00294 670 Gene3D - 62 158 IPR036052 -
Csa05g00294 670 PANTHER - 369 670 - -
Csa05g00294 670 PANTHER - 10 51 - -
Csa05g00294 670 Gene3D - 25 320 IPR036052 -
Csa05g00294 670 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 353 663 IPR036052 -
Csa05g00294 670 PANTHER - 33 320 - -
Csa05g00294 670 PANTHER - 346 389 - -
Csa05g00294 670 ProSitePatterns Serine/threonine dehydratases pyridoxal-phosphate attachment site. 54 67 IPR000634 GO:0006520|GO:0030170
Csa05g00294 670 CDD Thr-dehyd 353 660 - -
Csa05g00294 670 PANTHER SERINE / THREONINE RACEMASE FAMILY MEMBER 369 670 - -
Csa05g00294 670 PANTHER SERINE / THREONINE RACEMASE FAMILY MEMBER 10 51 - -
Csa05g00294 670 ProSitePatterns Serine/threonine dehydratases pyridoxal-phosphate attachment site. 391 404 IPR000634 GO:0006520|GO:0030170
Csa05g00294 670 PANTHER SERINE / THREONINE RACEMASE FAMILY MEMBER 33 320 - -
Csa05g00294 670 PANTHER SERINE / THREONINE RACEMASE FAMILY MEMBER 346 389 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00294 K12235 SRR; serine racemase [EC:5.1.1.18] - csv:101217208 643.269
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00294 Csa-Chr5:1844415 Csa06g02635 Csa-Chr6:23195757 5.05E-35 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g337 . Blo03g00210 Bda06g00086 . . Bpe07g00113 . . . . . . . . . . Cpe05g00324 . . . . . . . . . . . . . . . . . Cone9ag0772 . Csa05g00294 Chy09g01212 . . . . . . . . Bma12g00086 . . . . . . . . . Bhi12g00237 . . . . . . . . . . . . . Lsi09g00273 . . Cme09g01749
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013496 1 2 1 2 1 1 0 0 1 1 0 1 0 1 1 0 0 2 1 1 1 1 0 1 1 0 1 1 2 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00294 Csa_Chr05 FPKM 38.955902 40.590721 57.302822 57.898983 28.166134 25.793499 29.726429 25.56839 22.474787 20.749676