Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00296 ATGGAATCTTTTACTTCTCTTGTGGTGTTTCTCAGTTTGATTTTGGGGGTTCTTTTTGAGGCGTGTGATTCTATTTCTTCCAATGAAGTCATGGTTCTTGGGGCCTTCAGGTCAGAAGTATTTGAAGATCCATATCAAGTCTTCTCCAACTGGAACAGCCTTCAACCAGATCCTTGCTTATGGTCTGGCATTTCATGTTCTCCAACTAGAGACCATGTTATAAAGATTAACATTTCATATTCTGCAATAAAAGGGTTTCTTTCAGGAGATTTGGGTCAACTTAGCTTCTTGGAAGAATTAATTGTGCATGGGAATAAGCTGCATGGTCCAGTTCCCAAGGAGTTAGGCTACTTAAAAAACCTCAGAATCTTGGACTTGGGGATGAATCAATTAACAGGTCCAATTCCTTCAGAATTTGGGAATTTAACCAAACTTGTGAAAATAAACCTACAGTCTAATGAGTTCACTGGTAAGCTGCCTCCTGAGTTGGGAAATTTGAGATGCCTTGAGGAACTAAGGCTGGATAGAAATAAGCTTGGAGGAACTGTTGGCCATTCAGATCATACTGAACTGTATGCGACAAAAACGAACTTGACTGGGTTCTGTGGCTCATCTCAGCTAAGAGTTGCCGACTTTTCGTATAACTTTTTTGTTGGGAGCATACCAAAGTGTTTGGAGCATCTTCCGGGGTCAAGTTTCCAAGGGAATTGCCTCCATAAAATTAACTCCAAACAACGTCCTTCAGCACAATGTGAACCTGCTGTGACTAAGAGCCATCCGGGAACCAATGAGCAGAACCATCATCAAACAACGTCAAAACCTATCTGGCTTTTGGCCCTTGAGATAGTAACAGGAACTCTGGTGGGTTCTCTCTTCCTTGTTGCTGTTCTCACTGCAGTCCAGAAGTTCAATCGAAAGTCCTCCATGATATTGCCATGGAAGAAAGCTGGAAGTAGAAAGTACTACGCTCCAGTATATGTAGATCCTGAGATTTTAAAGAATGTAACAAGATTTAGTCGACAAGAACTTGAATTAGCTTGTGAAGACTTCAGCAACATAATTGGCTCCTCTCGAGACAGTTTGGTATACAAGGGCACCATGAAAACTGGACCTGAGATCGCGGTTATCTCAATGAGCATGAAAGAAGAGCAATGGACAGGATACCTTGAACTCTATTTTCAGACAGAGGTAGCAGATTTGTCACGAATTAACCACGAGAATACGGGGAAATTACTGGGTTATTGCAGAGAGAGTACTCCATTTACAAGGATGCTAGTTTTTGAGTATGCATCAAATGGCACATTATATGAGCATCTACATTATGGAGAAGCATGTCAATTATCTTGGACAAGGCGCATGAAGATTATTTTAGGCATTGCTCGGGGACTTAACTATCTTCACACAGAACTCCAACCTCCATTCACCATATCCGAGCTGAATTCCAATGCTGTATATCTCACAGATGATTTTTTTCCGAAGCTAATAGACTTCGAAAGTTGGAAGACTATTCTTTCACGATCGGAAAAGAACTCGGGATCTATAGCCAGCCAAGGTGCAATATGTGTTCTTCCAAACTCTCTAGAAGCACGACATCTCGATGTGCAAGGTAACATCTATGCATTCGGTGTCCTTCTACTCGAAATAATCAGTGGGAGGCCTCTGTACTGTAAAGACAAAGGAAACTTGGTAGATTGGGCCAAGGACTATATCGAAATGCCAGAAGTGATGTCGTACCTTGTTGATCCTCAACTGAAGCATTTTAGATATGAAGACCTTGAGGTAATATGCGAGGTGGCGAACCTTTGCATCCGTCAGCAGCCAACAAAACCGGTATCAATGAAGGAGCTCTGCGCCATGTTAGAAACTAGAATTGATACCTCTGTTGCCATTGAGTTTAAGGCTTCTTCTTTGGCATGGGCAGAGCTTGCACTCTCATAG 1938 42.0 MESFTSLVVFLSLILGVLFEACDSISSNEVMVLGAFRSEVFEDPYQVFSNWNSLQPDPCLWSGISCSPTRDHVIKINISYSAIKGFLSGDLGQLSFLEELIVHGNKLHGPVPKELGYLKNLRILDLGMNQLTGPIPSEFGNLTKLVKINLQSNEFTGKLPPELGNLRCLEELRLDRNKLGGTVGHSDHTELYATKTNLTGFCGSSQLRVADFSYNFFVGSIPKCLEHLPGSSFQGNCLHKINSKQRPSAQCEPAVTKSHPGTNEQNHHQTTSKPIWLLALEIVTGTLVGSLFLVAVLTAVQKFNRKSSMILPWKKAGSRKYYAPVYVDPEILKNVTRFSRQELELACEDFSNIIGSSRDSLVYKGTMKTGPEIAVISMSMKEEQWTGYLELYFQTEVADLSRINHENTGKLLGYCRESTPFTRMLVFEYASNGTLYEHLHYGEACQLSWTRRMKIILGIARGLNYLHTELQPPFTISELNSNAVYLTDDFFPKLIDFESWKTILSRSEKNSGSIASQGAICVLPNSLEARHLDVQGNIYAFGVLLLEIISGRPLYCKDKGNLVDWAKDYIEMPEVMSYLVDPQLKHFRYEDLEVICEVANLCIRQQPTKPVSMKELCAMLETRIDTSVAIEFKASSLAWAELALS* 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1859980 1864879 - CsaV3_5G002960.1 Csa05g00296 528683

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00296 645 ProSiteProfiles Protein kinase domain profile. 348 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa05g00296 645 Pfam Leucine rich repeat 120 179 IPR001611 GO:0005515
Csa05g00296 645 Gene3D Phosphorylase Kinase; domain 1 326 429 - -
Csa05g00296 645 Gene3D Ribonuclease Inhibitor 140 263 IPR032675 -
Csa05g00296 645 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 7 645 - -
Csa05g00296 645 Pfam Leucine rich repeat N-terminal domain 30 67 IPR013210 -
Csa05g00296 645 SUPERFAMILY Protein kinase-like (PK-like) 326 621 IPR011009 -
Csa05g00296 645 SUPERFAMILY L domain-like 28 229 - -
Csa05g00296 645 Gene3D Transferase(Phosphotransferase) domain 1 430 635 - -
Csa05g00296 645 PANTHER PROTEIN MALE DISCOVERER 2 7 645 - -
Csa05g00296 645 Gene3D Ribonuclease Inhibitor 29 139 IPR032675 -
Csa05g00296 645 Pfam Protein tyrosine and serine/threonine kinase 351 566 IPR001245 GO:0004672|GO:0006468
Csa05g00296 645 MobiDBLite consensus disorder prediction 249 268 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00296 - - - csv:101221772 1281.93
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa04g00601 Csa05g00296 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00601 Csa-Chr4:3962571 Csa05g00296 Csa-Chr5:1859980 0 dispersed
Csa05g00296 Csa-Chr5:1859980 Csa06g01402 Csa-Chr6:11983801 9.32E-18 dispersed
Csa05g00296 Csa-Chr5:1859980 Csa05g00837 Csa-Chr5:6219071 1.04E-87 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g341 . . Bda06g00084 . . Bpe07g00114 . . . Cmo16g01091 Cma02g01466 Cma15g01218 Car02g01230 Car15g01098 . Cpe14g00501 Cpe05g00322 . . . . . . . Cla07g00765 . . . . . . Cone8ag0315 . . Cone9ag0768 . Csa05g00296 Chy09g01210 Cme07g01624 . . . . . . . . . Cmo02g01503 Cmo15g01283 . Cma16g00589 . . . Cpe13g00162 Bhi12g00234 . . . . . . Cla01g00277 . . . . . . Lsi09g00275 Csa04g00601 Chy07g01211 Cme09g01747
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001701 1 3 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 3 3 1 70
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78214 PF07714 PK_Tyr_Ser-Thr 6.80E-18 CL0016 Csa PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00296 Csa_Chr05 FPKM 2.754209 2.526456 0.0 0.0 0.309072 0.0 0.293797 0.0 0.0 0.0