Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00297 ATGCAGAGATTTCCAATTTCAACTTCAATTTTTCCACCTTCCCGGAGACCCATTTGGGAATTATCTCTTCGAAAACGCTCCGCCGCCGTCGCAGTTCCGGCCGCCGCCATCTTCTTCCTCGCTGCCGTCCTCATTTCCTCCACTCGCCTCCAATTCACTCTGTTTCACACTAACTTTCTCGGCAACCAAACAGAAAAAATCCCCAAAAAATCAATCAAATATTACCCACTTAACTGTTCTTCATCTTCCACCACAAACCAAACCCAGCATTTCACTTGCCGTAAAGACTACCCGACCCTTTACGAACCCGAATCAATCGGCCCATCGGGTCGGTCCGTTTGCCCGGAGTACTTCCGATGGATCCACGAGGATCTGAAGCCGTGGGCGGCGGGGGGAATCACGAGAGAGATGGTGGAGAAAGGGAAGGCAACGGCGCATTTCCGGCTGGCGGTGGTCCGCGGGATTGTCTACGTGGAGCACTACAAGAAGTCGATTCAAACGAGAGATTTGTTTACAATTTGGGGGATTTTGCAGCTTTTGAGAAGATACCCAGGGCAAATCCCTGATTTGGAGCTGATGTTTGACTGTGACGACCGGCCGGTCGTTAAATCAGCCGACTACCGGAATGCGGGAGTGGATACGGTGGAGGCACCGCCGGTGTTCCGGTATTGCGGAGATGAGGAGACCTTGGATATTGTGTTCCCGGATTGGTCCTTCTGGGGATGGGCAGAGATAAACATAAGGCCATGGGAGAATTTGTTGAAGGAATTGAAAAAAGGGAATGAGAAGAGGAAATGGATGAAAAGGGAAGCTTTTGCATATTGGAAAGGGAATCCTTATGTGGCTGACACAAGACAAGATCTTCTCAAATGCAACCTCTCCCTTCAAAATGATTGGAATGCTCGTCTCTATATTCAGGATTGGATTCAAGAGTCTCAACAAGGTTATAAGCAATCAAAGTTGGCAAACCAGTGCACTTATAGGTACAAAATCTACATAGAAGGATATGGATGGTCAGTGAGTGAAAAGTATATATTGGCATGTGATTCAATGACATTGCTTGTAAAGCCCAATTTCTATGATTTCTTCAGTAGATCTTTGGAGCCACTTCACCATTATTGGCCTCTTAGTGATGACCATAAGTGCAAATCCATCAAGTTTGCTGTCCATTGGGGCAATTCCCACAAACAAAAGGCACAAGATATAGGAAAAACAGCAAGTAACTTCATCCAACAAGAGTTAAGGATGGAAAATGTGTATGACTACATGTTTCATCTCCTCAACCACTACGCGAAGCTCCTTCGGTTTCAACCTGAAATCCCGACGGGCGCAATGGAAGTCTGCTCCGAGACAATGGCTTGTCCGAGGGACGGGCCAGAGAAGAAGTTCATGAAGGAATCCATGGTGAAAACTCCCTCTCTCACAATCCCTTGCTCCATGCCACCACCATTTGATACCCCTTCTCTCCAAAGGCTTTATAGAAGAAATGCTAATCTAATAAGCCAAGTGGAGAAGTGGGAAAATCATTTTTGGATTCAAAATTAA 1545 46.34 MQRFPISTSIFPPSRRPIWELSLRKRSAAVAVPAAAIFFLAAVLISSTRLQFTLFHTNFLGNQTEKIPKKSIKYYPLNCSSSSTTNQTQHFTCRKDYPTLYEPESIGPSGRSVCPEYFRWIHEDLKPWAAGGITREMVEKGKATAHFRLAVVRGIVYVEHYKKSIQTRDLFTIWGILQLLRRYPGQIPDLELMFDCDDRPVVKSADYRNAGVDTVEAPPVFRYCGDEETLDIVFPDWSFWGWAEINIRPWENLLKELKKGNEKRKWMKREAFAYWKGNPYVADTRQDLLKCNLSLQNDWNARLYIQDWIQESQQGYKQSKLANQCTYRYKIYIEGYGWSVSEKYILACDSMTLLVKPNFYDFFSRSLEPLHHYWPLSDDHKCKSIKFAVHWGNSHKQKAQDIGKTASNFIQQELRMENVYDYMFHLLNHYAKLLRFQPEIPTGAMEVCSETMACPRDGPEKKFMKESMVKTPSLTIPCSMPPPFDTPSLQRLYRRNANLISQVEKWENHFWIQN* 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1869686 1873208 - CsaV3_5G002970.1 Csa05g00297 528684

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00297 514 Pfam Glycosyl transferase family 90 112 507 IPR006598 -
Csa05g00297 514 PANTHER O-GLUCOSYLTRANSFERASE RUMI-LIKE PROTEIN (DUF821) 30 513 - -
Csa05g00297 514 Coils Coil 489 509 - -
Csa05g00297 514 PANTHER KDEL LYS-ASP-GLU-LEU CONTAINING - RELATED 30 513 - -
Csa05g00297 514 SMART cap10 186 437 IPR006598 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00297 - - - csv:101222002 1063.91
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa03g01711 Csa05g00297 CCT
Csa03g01711 Csa05g00297 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01706 Csa-Chr3:12798304 Csa05g00297 Csa-Chr5:1869686 0 dispersed
Csa03g01711 Csa-Chr3:12820046 Csa05g00297 Csa-Chr5:1869686 0 dispersed
Csa03g01705 Csa-Chr3:12792039 Csa05g00297 Csa-Chr5:1869686 1.65E-142 wgd
Csa05g00297 Csa-Chr5:1869686 Csa06g00044 Csa-Chr6:299065 5.63E-179 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g342 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00297 Chy09g01209 . . . . . . . . . . . . . . . . . . Bhi12g00232 . . Lac11g2111 Hepe06g1560 . Lcy12g1668 Cla01g00278 Cam01g0288 Cec01g0281 Cco01g0294 Clacu01g0287 Cmu01g0274 Cre09g2233 Lsi09g00276 . . .
Vvi16g669 . . Bda05g00074 . . . . Bma14g02085 . . . . . . . . Cpe14g00108 . . . . . . . Cla01g00104 Cam01g0103 . Cco01g0105 Clacu01g0101 . Cre09g2404 . . . . . Csa05g00297 Chy09g01209 Cme06g01000 . Blo09g00110 . . . . . . . . . Cma16g00128 . . . Cpe09g00091 . . . . . . . . Cla05g00882 Cam05g0969 Cec05g0973 Cco05g0973 Clacu05g0956 Cmu05g0913 Cre05g0997 . Csa03g01711 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000256 4 8 4 4 3 4 1 4 5 4 4 4 6 5 5 5 4 11 3 4 5 4 5 6 6 7 5 8 8 9 155
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00297 Csa_Chr05 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0