Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00298 ATGGCCAAAGTGTACCCTCAAACAGCGCTGTCGCCGTCGCCGTCGTCCTCGTCGTCTCCATCCTCTTCATCTCTCTGTTCCGAAACAGAAACCGAAACCTTCACTATTTGGATGAAATCTCTAATTTACCACACAAATGGCTGCACAATCTTTGATTCTAATGGAGACATCGTTTATAGAGTTGATAACTACGACAGAAAATGCAGTAGCGAAGTATTTCTCATGGATCTCAGAGGCAAAGTTCTCTTCACCATCAGAAAAAAGAAATTCTCGATTCTTGGTGGATGGGAAGGATACCGATGGATGGAATCAGAGAGAAGTAAGAAGCCTAGTTTTGGAGTGAAGAAATTGTATAGATCGGGATCGAGGAAGAGAAATCAATCGGCGGTTTGTGAAATTAATGTAGGATTTGAGAGATTTTCATTGGTGAAAATGGATGGAAAATTGGCTTTCAGAATAATCAACATCAATGGAGAAGTAGTTGCAGAGGCTAAAAGAAAAGTATCATGGAACGGAATATTGTTGGGAGATGATGTGTTGAGTTTGAATGCAAATTCTCAGATCGAAACATCTTTGGTTATGGCTTTGGTTACTGTTTATGGATTAATCCGTCGCCAAATGTAA 624 40.22 MAKVYPQTALSPSPSSSSSPSSSSLCSETETETFTIWMKSLIYHTNGCTIFDSNGDIVYRVDNYDRKCSSEVFLMDLRGKVLFTIRKKKFSILGGWEGYRWMESERSKKPSFGVKKLYRSGSRKRNQSAVCEINVGFERFSLVKMDGKLAFRIININGEVVAEAKRKVSWNGILLGDDVLSLNANSQIETSLVMALVTVYGLIRRQM* 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1881719 1882912 + CsaV3_5G002980.1 Csa05g00298 528685

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00298 207 MobiDBLite consensus disorder prediction 1 24 - -
Csa05g00298 207 PANTHER - 2 206 IPR007612 -
Csa05g00298 207 MobiDBLite consensus disorder prediction 8 24 - -
Csa05g00298 207 Gene3D - 22 207 IPR038595 -
Csa05g00298 207 SUPERFAMILY Tubby C-terminal domain-like 27 203 IPR025659 -
Csa05g00298 207 PANTHER PROTEIN LURP-ONE-RELATED 4 2 206 - -
Csa05g00298 207 Pfam LURP-one-related 23 199 IPR007612 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00298 - - - csv:101222243 385.956
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00161 Csa-Chr4:898444 Csa05g00298 Csa-Chr5:1881719 5.43E-25 dispersed
Csa05g00298 Csa-Chr5:1881719 Csa07g02145 Csa-Chr7:20465378 1.21E-19 dispersed
Csa05g00298 Csa-Chr5:1881719 Csa05g00300 Csa-Chr5:1889345 1.48E-42 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g344 . . . . . . . Bma14g00614 . . Cma02g01468 Cma15g01216 Car02g01231 . . . . . . . . . . . . . . . . . . Cone8ag0316 Cone12ag0315 . . . Csa05g00298 Chy09g01207 . . . Bda07g00475 . . Bpe11g00654 . Bma12g00089 . Cmo02g01505 Cmo15g01280 . . . . . Cpe13g00163 Bhi12g00230 . . Lac11g2112 Hepe06g1561 . Lcy12g1669 Cla01g00280 Cam01g0290 Cec01g0283 Cco01g0296 Clacu01g0289 Cmu01g0276 Cre09g2231 Lsi09g00279 . . Cme09g01744
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004305 2 2 0 3 3 1 1 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 4 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00298 Csa_Chr05 FPKM 13.998994 16.182673 2.083724 1.886987 2.063509 3.120503 2.315061 0.0 0.0 0.0