Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00299 ATGTTTAAGTCGGCGAGATGGAGGAGTGAGAAGAATAAGGTTAAGGCGGAATTCAAGTTGCAGTTCTACGTCACCAAGGTGTCACAGTCAGTGGTGGATGCATTGACGTTATCCGTTGTACCTGGAGATGTGGGAAAGCCAACTGCAAGATTGGATAAAGTTACAGTTCGTGATGGAAGTTGCAAATGGGAAACGCCGGTTTATGAAACGGTCAAGTTCGCGCGAGACACGAAATCTGGGAAGATCAATGAGAAAATCTATTATTTCCTCGTATCGATGGGACGAGCAAAATCCAAGGTGTTTGGGGAGGTTTCTATCAACTTAGCTGATTATGCCGATGCTACAAAATCTTCTTCTGTCTCTCTTCCCCTAAAGAATTCAAATTCTGATGCGGTTTTGCACGTTTTGATACAGAAGCTGCAGGCTAAAATTGAGCCAAGAGAGGTAGAAGATTTTGACAATGTCAGTGTTAAATCCCAGGAGACGAACTTGAAATCGTACTTGAGCAATGGTGAATTAGATGAGAGCACTAAAAACAATTGCACGGAAGATGAACAGATTGGCAAGAACCCTCGTGATTTTGAACTAAATGGTGACTGTCGAGAATCAAGTGGATCTGATATTACATTGTCAAGTTCCGAGAGCAGCTCTGGACTTGATACTCCACGAGAACATAGTGCGAGAAACAATAATCATCTTCAACTTGTTACCTTATCATCACAACCTCACAAACCAGAAGCATTCCTTTCAACATCCACTAATAAGGAGAATCATAGATCACAATCAATGTGGTCCCTTGGTTCTGATCACGGAGTAAGCATAGATGAATCGTCAGATGATATGCCTCCTATAAAAAGGTCTGGACTGGTTACGACGTCTGAAAAAGTTGCTGACATTGAGATTGAAAAGCTCAAGGCTGAGCTAGTTGGCTTTTCCAGGCAGGCAGAAGTTTCAGAATTGGAACTACAGACGCTTCGAAAGCAAATTGTCAAAGAAAGTAAAAGGGGTCAGGATTTGTCAAAAGAAATTGTCATCTTGAAAGAGGAGAGAGATTCACTTAGGGCGGAATATGAGAAACTCAAGGCCAAATCGAAAAACAACGTGGAGTTCGAGGATAAGGAAATAGAGGCTCTTCTAGAAGAAATGAAGGAAGAACTAAACAAAGAAAAGGAATTAAATAGCAATCTTCGACTACAACTTCAGAAGACTCAGAAATCTAATGATGAGTTGATTCTTGCAATGCGAGACCTAGAGGAAATGTTAGAGCAAAAAAATGGTGACAGACTCCGTCTCTACGACAGATCAAGATTTTCTGAGAATGCTGAAGAGTTCTATAATTCCATCTCGAAGTGTGAATCTGAGGATGATGAGGAGCAGAAGGCGTTGGAAAAGCTGGTTAAGCAGCATAGTAATGCAAATGAAACATTTCTTCTGGAACAAAAGGTTGTTGACCTATATAGTGAAGTAGAGTTCTACAAGAGAGAAAAGGATGAATTAGAAATGCATATGGAACAACTAGCACTTGACTATGAAATACTGAAACAAGAAAATCATGGCATGTCATATAAACTGGAGCAATGTGAACTACAGGAGAAACTTGATATGAAAGAAGAATGCACGTCCTCGGCTACCATAGTAGAGCTGGAAACGCACATAGAGCACTTGGATAGGGAACTTAAGCAGCGGTCCAAGGACTTCTCTGATTCTTTGAGCACCATAAAAGAGCTTGAATCCCATATCCAGGCCTTGGAAGAAGAACTGGAGCAGCAAGCTGAAAAATTCATAGGTGATCTAGAAGATATGACACGGGCCAAAATTGAGCAGGAGCGAAGAGCCATCCTAGCAGAGGAGGACTTGAGAAAGACAAGGTGGAGAAATGCAAATACAGCCGAGAGGCTTCAAGAAGAACTGAAGCGGCTTTCGATGCAGATAGCCTCGACGTTTAATGCAAATGAGAAGGTAGCTGCTAAAGCTGTGGCAGAATCTATCGAGCTGCAACTGCAGAAAATTCAATTAGATGAAAAACTTGCGTCTGCTAATAAAGACCTCCAATCAGTTAAGAGGGAGCATGAGGCTAAGCTCTGTGAACTAAAAAATGTAGTAGATTTGCAAACAAGTCAGATAGAACACATGTTTTTAGAACTTCATACGAAATCCAAGCTGCTTGATCAACAAGAAATTCAAAAGGAGGTTTTTGAATCTCTCTCTCGGGAGATTTTGTTGCTCAAGTATGAAGTTGAAAGGCTCACGACAGAGAATAGGTTTCTCAAAGAAAGCGAGAGCTTGATTCAGAACGAAAACATGGAAAGAAATGACCTGGTAACAACCATTGCTTTGATTATGAAAGCAGGTGAGAAGTTTCAGATCGAGATAAATAGAATAAGGCATCAGAAGGATGAACATGAGATATCAATGGGATGTCTGCAAACAGAGTTGGAGGTGCTTAGAGATCACTACAGTGACTTAAAACATTCTTTAGTAGAAGGAGAGATAGAGAAAGATAAACTCAGACACCAGGTCTTTCAGCTAAATGATGACTTAAAGAAGGCGAAGGAATTCAACGGTGTTGACATGCTCTGGTATAGTGAGGAACAAACGTCAGCTTGTGATGGAACTGAAGCTATTAAGGAAAGTAACAAGTCCACTCCATGCCAAAGTAGTTCAAAGGAAGTCGCAGCTCTAAGGGAGAAAATTGAATTGCTTGAGAGACAGATAAGTTTGAAAGAAGACGCCATTGAAACTCTAGCTAGTAGAATTTCAGAAAAGGCAGTGGATTTTCAGCACACAATTGAAGAGCTAGAGTGCAAATTGGAAGAAGTTGCTCCTACTAGCTCATTCCAAGAGGTAAATATCTATCCAAGCAGCGTCGAAAGGACCGGTGATTCACCCAACGATACAGTGGTGAACCAAGGCCAAAACCCAATTTCTTCATCATCCGTAGAATGTGGCAATACGGTGTCAGTTGAAAGGAATGACAGAATTTCAGCAGAGACAGAATTGAAAGCCTGCAAACTTGACGACAGTGACAACAATTGCGACAATTTTTCGACAGAATTAGCATTATTGAGGGAAAAAAACAAATTAATGGAGAGTGAACTAAAGGAAATGCAAGAAAGATATTCAGAGATAAGTCTCAAGTTTGCAGAGGTAGAAGGTGAAAGACAGCAGCTTGTAATGACTCTACGCAGTCTTAAAAATTACAAGAAGATTTAG 3213 40.71 MFKSARWRSEKNKVKAEFKLQFYVTKVSQSVVDALTLSVVPGDVGKPTARLDKVTVRDGSCKWETPVYETVKFARDTKSGKINEKIYYFLVSMGRAKSKVFGEVSINLADYADATKSSSVSLPLKNSNSDAVLHVLIQKLQAKIEPREVEDFDNVSVKSQETNLKSYLSNGELDESTKNNCTEDEQIGKNPRDFELNGDCRESSGSDITLSSSESSSGLDTPREHSARNNNHLQLVTLSSQPHKPEAFLSTSTNKENHRSQSMWSLGSDHGVSIDESSDDMPPIKRSGLVTTSEKVADIEIEKLKAELVGFSRQAEVSELELQTLRKQIVKESKRGQDLSKEIVILKEERDSLRAEYEKLKAKSKNNVEFEDKEIEALLEEMKEELNKEKELNSNLRLQLQKTQKSNDELILAMRDLEEMLEQKNGDRLRLYDRSRFSENAEEFYNSISKCESEDDEEQKALEKLVKQHSNANETFLLEQKVVDLYSEVEFYKREKDELEMHMEQLALDYEILKQENHGMSYKLEQCELQEKLDMKEECTSSATIVELETHIEHLDRELKQRSKDFSDSLSTIKELESHIQALEEELEQQAEKFIGDLEDMTRAKIEQERRAILAEEDLRKTRWRNANTAERLQEELKRLSMQIASTFNANEKVAAKAVAESIELQLQKIQLDEKLASANKDLQSVKREHEAKLCELKNVVDLQTSQIEHMFLELHTKSKLLDQQEIQKEVFESLSREILLLKYEVERLTTENRFLKESESLIQNENMERNDLVTTIALIMKAGEKFQIEINRIRHQKDEHEISMGCLQTELEVLRDHYSDLKHSLVEGEIEKDKLRHQVFQLNDDLKKAKEFNGVDMLWYSEEQTSACDGTEAIKESNKSTPCQSSSKEVAALREKIELLERQISLKEDAIETLASRISEKAVDFQHTIEELECKLEEVAPTSSFQEVNIYPSSVERTGDSPNDTVVNQGQNPISSSSVECGNTVSVERNDRISAETELKACKLDDSDNNCDNFSTELALLREKNKLMESELKEMQERYSEISLKFAEVEGERQQLVMTLRSLKNYKKI* 1071
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1888919 1896154 - CsaV3_5G002990.1 Csa05g00299 528686

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00299 1070 Coils Coil 482 516 - -
Csa05g00299 1070 Coils Coil 884 918 - -
Csa05g00299 1070 ProSiteProfiles C2 NT-type domain profile. 6 141 IPR019448 -
Csa05g00299 1070 MobiDBLite consensus disorder prediction 167 286 - -
Csa05g00299 1070 MobiDBLite consensus disorder prediction 202 272 - -
Csa05g00299 1070 PANTHER MYOSIN HEAVY CHAIN-RELATED PROTEIN 1 1069 - -
Csa05g00299 1070 Coils Coil 630 650 - -
Csa05g00299 1070 PANTHER MYOSIN HEAVY CHAIN-RELATED PROTEIN 1 1069 - -
Csa05g00299 1070 Coils Coil 301 427 - -
Csa05g00299 1070 Coils Coil 1005 1053 - -
Csa05g00299 1070 MobiDBLite consensus disorder prediction 177 200 - -
Csa05g00299 1070 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 11 141 IPR019448 -
Csa05g00299 1070 Coils Coil 669 696 - -
Csa05g00299 1070 Coils Coil 545 618 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00299 - - - csv:101222480 1999.94
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00603 Csa-Chr4:3974759 Csa05g00299 Csa-Chr5:1888919 0 dispersed
Csa05g00299 Csa-Chr5:1888919 Csa05g01566 Csa-Chr5:18312258 9.06E-39 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g345 Blo02g01105 Blo03g00203 Bda06g00083 . Bpe05g00637 Bpe07g00115 . Bma14g00613 . Cmo16g00637 Cma02g01064 Cma15g01215 Car02g00807 Car15g01096 . Cpe14g00498 Cpe05g00319 . . . . . . . Cla07g00764 Cam07g0819 Cec07g0878 Cco07g0854 Clacu07g0797 Cmu07g0804 Cre07g1159 Cone8ag0317 Cone12ag0316 . Cone9ag0766 . Csa05g00299 Chy09g01206 . . . . . . . Bma05g00813 Bma12g00090 . Cmo02g01506 Cmo15g01279 Cma06g00414 Cma16g00588 . . . Cpe13g00164 Bhi12g00228 . . . . . . Cla01g00281 Cam01g0291 Cec01g0284 Cco01g0297 Clacu01g0290 Cmu01g0277 Cre09g2230 Lsi09g00280 . . Cme09g01743
Vvi16g663 Blo06g01120 . . . . . . . . . Cma02g01064 . Car02g00807 . . Cpe05g00655 . . . . . . . . Cla01g00281 Cam01g0291 Cec01g0284 Cco01g0297 Clacu01g0290 Cmu01g0277 Cre09g2230 . . Cone14ag0089 Cone15ag0095 . Csa05g00299 Chy09g01206 . . . . Bda15g00731 . Bpe12g00427 . . . Cmo02g01081 Cmo15g01279 . . . . . Cpe13g00164 Bhi12g00227 . . Lac11g2114 Hepe06g1563 . Lcy12g1671 . . . . . . . . . . Cme09g01743
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001416 2 3 2 2 2 2 3 2 2 2 2 2 4 2 2 3 2 4 3 2 2 2 2 2 2 2 2 5 4 1 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00299 Csa_Chr05 FPKM 11.084793 12.735464 14.438609 12.943077 15.853682 16.222248 17.391813 25.662752 24.708279 25.617388