Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00302 ATGGACGGTCGAGCTTTAACGGCCTCTTCCTTCTTCACTCCCATTGATTTATTGCGACCCAGAAGAAGAGCTGTTAGAAATTTGTGTTTTAATGGCAGACCCAGTAAGTTTTCGGTTCTTTCTTCCAAAGAAGAGGCTGAACTCGACCGTTGGGACCAAATGGAGCTCAAATTTGGCCGCTTGATTGGGGAAGACCCCAAATTAACATTGGCTAAGATAATGAGCAAAAAAATGAATCCGGATGCTTCTTATCTTGAAGTTGAAAAATCGTTTTACCAAAAGAAGGGTAAGTCTAATGAGGTAGAGGAACTTTCTCTTGATGGTTTGAATTTGGTCAGACCTCAGCTAAAGAAGGAAATGAAGTTAAAGGCTGCCAATAAGCCACCTGGACCAGATATAAAGAAACCAAGTCAAGCTGTTGGAAAGGTACCAGTTAGTCCTAAGGGTAGGGTTCCCAATGTTATTTTGAGAAAACCGACTACTTATAATGAGGATGATGTTGAAGATAAGCCGTCGCGGATAAGGATGAAGCCAAATTTATCGTTGAAAATGAGCAATGTATCGACAAAGGAGAAATATAGTGATATGACATTGTTGAGGAAGCCAGAACCAATGACTTCAAATGAAGTTATTGATGAGGAAAAGCTCTCTGGTGATGGGTATGTTGATAATGTTGAGAATATTGAAAATTGGGCCAGTAAGGAACCAACAAGTGACCGAATTGATGATTTTACTCTTTCTAAAAAGCCAGAAATAGGAGGTGACGAAACAAGACTTGAAAGTGAAAGTGATATGGTTGATGTTAAAGAGAAAAACGGCATTGATGACTTGTACATCTTAAAAAGGCCTTTAAATGTGATGTCGGGCGTGTCTGAAGAAACTGAAGTAGGCTCATCAACAAATGAAAATGGGAAAGATATTGATTATTCTGCCATAGGATTGCAGCAGCTACATGAGCCAAGTGATATAGATTATGTTGAGAACCCAGCAGCTCTGAGCGAATCATTCAGTGATATTTTGGATTTAACAATAGAAGCGTCCAAAAAAGCTACCTTATTGGGTAAACCAAGAAGAGTAGATCATTCTTCTAAAGAAACTCCAAAACTCAATAGAGAAGAGACATCCACCCCTGAAACAGACGTCAATGGTGCTTTTGAGACAGAGAACTTCTCTGCTATCCCTGCTTTGGAGGAGCACGAACTTGCTGACTGGACAAAAGCAGAGGATCTGGCTAAGTCAGGAGATAGAGCTGATGTGGAAGTAATAAGCTCGAGTACTCGAGGTTTTGTTGTATCATTTGGTTCCCTAGTAGGATTTATTCCATATCGTAATCTTGCTGCGAAGTGGAAGTTCTTAGCTTTTGAGTCATGGCTAAGACAGAAAGGCTTGGATCCATCAATATACAAGCAAAACTTAGGAACTATTGGAAGTAGTGATGGTGGAAGCCAGGCCTTTGCCAGTACTAGGCCGGATTCAGAAATTGATGTAAAAGATGGGGGAGAACTTACACCTGATATGAAATTGGAGGATCTTCTCCAAATTTACAATCAAGAGAAAATCAAATTCTTGTCATCATTTGTTGGCCAGAAAATCAAAGTAAATGTGGTGTTGGCCAACAGAAAATCGAGGAAGCTTATATTTTCCATAAGGCCAAAAGAGAGGGACGACTTGGTCAAGAAAAAAAGAAGTTTAATGACGACGCTGCAAGTAGGTGACGTTGTCAAATGCTGCATTAAGAAGATTGCTTATTTTGGTATCTTTGTCGAGATCGAAGGAGTGCCTGCTTTGATTCATCAGACAGAGATTTCCTGGGATGTTAATTTGAACCCTGCATCATATTTTAAAATTGGTCAGGTTGTTGAGGCAAAAGTTCATCAGTTGGATTTTTCACTGGAACGCATATTCTTATCGTTGAAGCAGATTACACCAGACCCGCTAGCTGAAGCATTGGAGTCTGTGGTTGGTGATCATGATCCCATGGATGGAAGATTAGATTCAACCGAAATAGATACCGAGTGGGCTGATGTAGAATCTCTCGTTAAGGAACTGCAAAATATTGAAGGTATTGAGGCTGTATCCAAAGGGCGTTTTTTCCTTAGCCCTGGTTTGGCTCCAACCTTTCAGGTATATATGGCTTCTATGTATGAAAATCAGTACAAATTACTTGCTCGATCTGGAAACAAAGTACAAGAGTGTGAAAAGAATGGATGTATCTTTAGTGACACTGGTTCCACATCTGAGGGCTTCATAATCTGTATTGTGCAAGTGCCACTTCCATGGCTAACCCCTGAAGAAACTCCATTCTTCCCTTTTACACTTCTCTTCTCAAACTCTCATACCCGTAATTTCTTTTTGCCCTTGTTTACCCCCCTCCCCCTTGATATATTTCCCTCTGTTTCTGGCTGTGGCATTGGGGATAAGGAGGTAAAAGAGAAGAGGAGCAAAATGGGAATGGGAACTAGCATATTTATCATAAGGTGGATCAATTTTCTCACCATGTTTCTGGCTATTCTTGTTATAATATTTGGGATATGGATGGGCACCCACCACGACGGTTGTCGAAAATCTCTCACTCTTCCTGTCATGGGACTTGGTGGATTCATCTTTGTGGTGTCCATAGTTGGTTTCTTGGGTGCCCTTAAGAACAATTCGATATTGCTGTGGATTTATCTGATCATGTTGTGCATTACGTTGGTGGGGATTCTCGTGTTTACAGTGTTGGCGTTTATTGTTACAAATAATGGATCGGGACATGATGTTGCTGGCTTGAGGTATAAGGAGTATCAACTACAAGACTATAGTACGTGGTTTCTAAAACAGCTTAACAATACTGAAAATTGGATGCGTCTGAAAAGCTGTCTAGTCAAATCCGAGGATTGCAATAACCTTTCAAAAAGATACAAGACTCTCAAGCAGTACAAATTGGCAAAGCTGACGCCCATGGAAGCGGGTTGTTGTAGACCCCCATCCGAATGTGGTTATCCAGCTGTTAATGCATCATACTATGACTTGAGCTTTCATCCTGTCAATTCAAACCATGATTGCAAAGTATACAAGAATTCCAAGGCGGTCAAGTGTTACGATTGTGATTCGTGCAAGGCCGGAGTCGCACAGTACATGAAAACTGAATGGCGATTGGTTGCTATCTTCAACGTCATTCTATTTGTTGTCTTGCTGATAATCTACTTAGTCGGATGCTGCGCTAGGCGAAAAGCTGCTAGAAATCGATCTAAAGATATGTTTACATAA 3249 40.69 MDGRALTASSFFTPIDLLRPRRRAVRNLCFNGRPSKFSVLSSKEEAELDRWDQMELKFGRLIGEDPKLTLAKIMSKKMNPDASYLEVEKSFYQKKGKSNEVEELSLDGLNLVRPQLKKEMKLKAANKPPGPDIKKPSQAVGKVPVSPKGRVPNVILRKPTTYNEDDVEDKPSRIRMKPNLSLKMSNVSTKEKYSDMTLLRKPEPMTSNEVIDEEKLSGDGYVDNVENIENWASKEPTSDRIDDFTLSKKPEIGGDETRLESESDMVDVKEKNGIDDLYILKRPLNVMSGVSEETEVGSSTNENGKDIDYSAIGLQQLHEPSDIDYVENPAALSESFSDILDLTIEASKKATLLGKPRRVDHSSKETPKLNREETSTPETDVNGAFETENFSAIPALEEHELADWTKAEDLAKSGDRADVEVISSSTRGFVVSFGSLVGFIPYRNLAAKWKFLAFESWLRQKGLDPSIYKQNLGTIGSSDGGSQAFASTRPDSEIDVKDGGELTPDMKLEDLLQIYNQEKIKFLSSFVGQKIKVNVVLANRKSRKLIFSIRPKERDDLVKKKRSLMTTLQVGDVVKCCIKKIAYFGIFVEIEGVPALIHQTEISWDVNLNPASYFKIGQVVEAKVHQLDFSLERIFLSLKQITPDPLAEALESVVGDHDPMDGRLDSTEIDTEWADVESLVKELQNIEGIEAVSKGRFFLSPGLAPTFQVYMASMYENQYKLLARSGNKVQECEKNGCIFSDTGSTSEGFIICIVQVPLPWLTPEETPFFPFTLLFSNSHTRNFFLPLFTPLPLDIFPSVSGCGIGDKEVKEKRSKMGMGTSIFIIRWINFLTMFLAILVIIFGIWMGTHHDGCRKSLTLPVMGLGGFIFVVSIVGFLGALKNNSILLWIYLIMLCITLVGILVFTVLAFIVTNNGSGHDVAGLRYKEYQLQDYSTWFLKQLNNTENWMRLKSCLVKSEDCNNLSKRYKTLKQYKLAKLTPMEAGCCRPPSECGYPAVNASYYDLSFHPVNSNHDCKVYKNSKAVKCYDCDSCKAGVAQYMKTEWRLVAIFNVILFVVLLIIYLVGCCARRKAARNRSKDMFT* 1083
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1907440 1923444 - CsaV3_5G003020.1 Csa05g00302 528689

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00302 1082 SMART S1_6 412 550 IPR022967 -
Csa05g00302 1082 SMART S1_6 569 639 IPR022967 -
Csa05g00302 1082 MobiDBLite consensus disorder prediction 124 151 - -
Csa05g00302 1082 MobiDBLite consensus disorder prediction 479 499 - -
Csa05g00302 1082 SUPERFAMILY Nucleic acid-binding proteins 565 662 IPR012340 -
Csa05g00302 1082 MobiDBLite consensus disorder prediction 355 375 - -
Csa05g00302 1082 Pfam S1 RNA binding domain 568 639 IPR003029 GO:0003676
Csa05g00302 1082 ProSiteProfiles S1 domain profile. 571 639 IPR003029 GO:0003676
Csa05g00302 1082 Gene3D - 561 652 IPR012340 -
Csa05g00302 1082 PRINTS Transmembrane four family signature 881 909 - -
Csa05g00302 1082 PRINTS Transmembrane four family signature 823 846 - -
Csa05g00302 1082 PRINTS Transmembrane four family signature 854 880 - -
Csa05g00302 1082 Pfam Tetraspanin family 824 1068 IPR018499 GO:0016021
Csa05g00302 1082 MobiDBLite consensus disorder prediction 355 384 - -
Csa05g00302 1082 PANTHER NUCLEIC ACID-BINDING, OB-FOLD-LIKE PROTEIN 20 731 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00302 - - - csv:101217667 1427.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00314 Csa-Chr4:1930988 Csa05g00302 Csa-Chr5:1907440 4.36E-16 dispersed
Csa05g00302 Csa-Chr5:1907440 Csa01g00308 Csa-Chr1:1929702 5.71E-54 dispersed
Csa05g00302 Csa-Chr5:1907440 Csa01g00636 Csa-Chr1:4048451 1.58E-56 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g361 . . . . . . . . . . . . Car02g01235 . . . Cpe05g00315 . . . . . . . . . . . . . . . Cone12ag0318 . . . Csa05g00302 Chy09g01202 . . . . . . . . . . Cmo02g01509 . . . . . . . Bhi12g00221 . . Lac11g2118 Hepe06g1567 . Lcy12g1675 . . . . . . . Lsi09g00285 . . Cme09g01739
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010174 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00302 Csa_Chr05 FPKM 1.242894 0.369745 0.623291 0.0 1.147804 0.550645 0.0 0.184517 1.0237 0.95786