Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00308 ATGGTGGCCAAGGGTTCGCCGGATTGGCTTCCCTCTGGCTGGACTGTGCAGTATAAAGTTCAGAAGACGGGCCGGAAAATTAGGTTCTATACAAACTTGGAGAATGGAAAAAGCTTTTATTATAAGGATGATGTTATTGGTTATATTAAAAGCACTCAGTCTCAAAAGTCTCAACCAACTTCGAGGGGCGTAAAAACTCAGTCAGGAAATAGTCCACTGCAACTGACGGTGAAATCAAATGAACACCCTGAATGGTTGCCTGCTGGCTGGAAAGTGGAGTCAAGAACAAGGATGAGTGGTTCAAATGTTGGAGCTGTTTACAAGTGTTACATTGATCCAGTGACGGACAGCAGATTTTATTCAAAGCCAGAGGTATTTCGACATCTCAGAACTGTAAAGAACAAATTATGCACATTGAAAGAGAGGAGGACAAGCAACGGCAAGAAGTCTAGAAGTCGAGTTGTTATCGAACATTATAAAGATGAAGATTTGCCGCCTGGATGGATAAAGGAAATCAAGATCAAAGAAAAAGCAGATGGCATTAGGAAAGACCCGTTTTACATAGATCCAAAATCTGGATACGTATTCCGCTCCAAAAAGGAGGTTTTCCGCTATCTCGAGACTGGAGAGATCAGTAGACATGCATTTAAACCAAAGGAAGGGGGCGATGAAGATCAGGAGTTGATAAGTGACAAAAAATCACGATCGACTGTTAGAGGACAGAAATTGGAGCAGTCTGCAGCAACCCCACAATCTCTTGCAGGTGAGGAAATGGCAACAGGGAGACGGTCAGAACGTCCAGGAGTCCATATTCAACAGTTGAAGCAACGCCAGAATGTGTCTTCTGCACTGAAAGATGCTTTAGTTCTTCCTGTTGAAACTGTTGAAGAGATTATTTTGCCTCAAGAAGCGGTCATCAAGGAGTCTACTGAAATCGAAGAAAAAAGTCATAAAGATTTATCATCTCCAAAAGCTGATCATACAGAAGGTAATGAAAATGAAAGAGTATCTTCTGATAATGTAGCAGTTTCTATTTGTGCATCTGAGTCTGACCAAGAGATCAAAGCGTTGCCAAAAGTTCAAAAGCTAGAAAGTAATAAAATTGAAATAGTAGTAACTCCTGATAACAGTCCACTTATAAACACTGCATCTAAGTTGGAACATGAGAAGATTGCGATCAGTAATACAATGGAAAGTGGTGTCAATGGGCGAAAGACAAAGACGAGGAAGTCCAAGAAGAAGAAAGATGTCAACTTGCCTCGGAGGTCTTCAAAACGACTTGCTGGACTTGAACCAGAGTTGGTGCCTAAAGAAGATGCTAAAGAAGTTCCTCAAGTTTCAAATAGAAATATTTTCACTGAAGTTAGTCCAGATGCTGGCCTAGCAGTGAAAGCGGATGCAGATGTTCACAATACAGATAAAGCATCACAGCAGCTCGATGTGAGGTCTGAAAAAGACAATAAAGACCATACACCTAATCACAAGGACACGCCGTTACGTGAAAATCACAAGGACATGTCCTTATGTGAAAATCCTTCCAATAAAAGGAAGACTCCTCTTGCATGCGGCGTTGATGCCCCAGAAGAGAAAATACAAAGAGTGGAAACTGAAAAGAAGGATGATGGAAAGATGGAAGCGCAGCTGAATGTTCCAATTGCTGATTTTTGGTCAGACCCGTGCTTGGAATTTGCAATCAAAACTCTTACGGGTGCGTTGCCGGTGGAGAATGCCACTACCACCAACGAGCCAGTTTCTAATCCTACAGTCAACTTCCTGCAAGGACAGAGCTCAGTAAAAAATGGTCCGGGAAGTCGCATGAATAAGAGAACTCAAGGGAACAAAAGAATCAGGAACAAGAAAGAGCTCACTACTAGTAGTCAATCTCCAAGTATTAATGGGCTCAAGCCTGAACTGGCATCAAATATAATTTCCTTTGATCAAGCAAACCCAAATCATCATTCAAATGAAGCTGTTCTGGCTTTTAATTTATCAGACGGTAGAATACATGGACAACCGAGTAAGAATGAACAATATAAAACATCTTGCGAAATCTTGACACCCAGTGAGCTGCATCATTCCCTGCCCCAGGTAGACTCCGAACGATTTAACGGGATCAGCGCATGTCATGAGAGCAACAACATGATGCTCGATGATCCGCATCAAATCCTTCAAACGAATGACCATATGACATCAGAAGTTCCATTATCCTTTCCATTTGGGGATTCCTGGGCAGATCCGTGCTTGGATTTTGCATTCAAGACCCTCACAGGTGCAATACCAATCGACGATAGTCTGGAAATTCAAAGCTTCTTTGAGGAACGACTTGAATCCTCTCGCAGCCAAAAAGACAGTAGCCCAGCACTGCCAGACTTTGGATCCCCTAACCTCTTCCAAAACGATATATCATCCCACTTTGACGGACCCGAAAAATCTGTTTCGGGACAGCACTTGAGTTTAGATCCTCAGCTGTCTCTAGGGAACGTGAGCCTACCAAGCTGCAGTGGATTCACTTCTCAACAGCAGTCTTCGGTGGATAGAAACAGATCTTTTAGAGGAAGGTGA 2562 42.58 MVAKGSPDWLPSGWTVQYKVQKTGRKIRFYTNLENGKSFYYKDDVIGYIKSTQSQKSQPTSRGVKTQSGNSPLQLTVKSNEHPEWLPAGWKVESRTRMSGSNVGAVYKCYIDPVTDSRFYSKPEVFRHLRTVKNKLCTLKERRTSNGKKSRSRVVIEHYKDEDLPPGWIKEIKIKEKADGIRKDPFYIDPKSGYVFRSKKEVFRYLETGEISRHAFKPKEGGDEDQELISDKKSRSTVRGQKLEQSAATPQSLAGEEMATGRRSERPGVHIQQLKQRQNVSSALKDALVLPVETVEEIILPQEAVIKESTEIEEKSHKDLSSPKADHTEGNENERVSSDNVAVSICASESDQEIKALPKVQKLESNKIEIVVTPDNSPLINTASKLEHEKIAISNTMESGVNGRKTKTRKSKKKKDVNLPRRSSKRLAGLEPELVPKEDAKEVPQVSNRNIFTEVSPDAGLAVKADADVHNTDKASQQLDVRSEKDNKDHTPNHKDTPLRENHKDMSLCENPSNKRKTPLACGVDAPEEKIQRVETEKKDDGKMEAQLNVPIADFWSDPCLEFAIKTLTGALPVENATTTNEPVSNPTVNFLQGQSSVKNGPGSRMNKRTQGNKRIRNKKELTTSSQSPSINGLKPELASNIISFDQANPNHHSNEAVLAFNLSDGRIHGQPSKNEQYKTSCEILTPSELHHSLPQVDSERFNGISACHESNNMMLDDPHQILQTNDHMTSEVPLSFPFGDSWADPCLDFAFKTLTGAIPIDDSLEIQSFFEERLESSRSQKDSSPALPDFGSPNLFQNDISSHFDGPEKSVSGQHLSLDPQLSLGNVSLPSCSGFTSQQQSSVDRNRSFRGR* 854
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1939207 1947159 + CsaV3_5G003080.1 Csa05g00308 528695

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00308 853 MobiDBLite consensus disorder prediction 833 847 - -
Csa05g00308 853 MobiDBLite consensus disorder prediction 216 239 - -
Csa05g00308 853 PANTHER OS04G0193200 PROTEIN 6 845 - -
Csa05g00308 853 MobiDBLite consensus disorder prediction 579 634 - -
Csa05g00308 853 MobiDBLite consensus disorder prediction 464 521 - -
Csa05g00308 853 Gene3D - 81 140 - -
Csa05g00308 853 Gene3D - 5 77 - -
Csa05g00308 853 MobiDBLite consensus disorder prediction 579 609 - -
Csa05g00308 853 MobiDBLite consensus disorder prediction 798 818 - -
Csa05g00308 853 PANTHER OS04G0193200 PROTEIN 6 845 IPR038945 -
Csa05g00308 853 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 1 71 IPR001739 GO:0003677
Csa05g00308 853 SUPERFAMILY DNA-binding domain 82 134 IPR016177 GO:0003677
Csa05g00308 853 Gene3D - 141 253 - -
Csa05g00308 853 MobiDBLite consensus disorder prediction 311 337 - -
Csa05g00308 853 MobiDBLite consensus disorder prediction 216 274 - -
Csa05g00308 853 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 154 223 IPR001739 GO:0003677
Csa05g00308 853 Pfam Methyl-CpG binding domain 81 134 IPR001739 GO:0003677
Csa05g00308 853 Pfam Methyl-CpG binding domain 162 210 IPR001739 GO:0003677
Csa05g00308 853 MobiDBLite consensus disorder prediction 395 434 - -
Csa05g00308 853 MobiDBLite consensus disorder prediction 467 511 - -
Csa05g00308 853 MobiDBLite consensus disorder prediction 406 420 - -
Csa05g00308 853 MobiDBLite consensus disorder prediction 833 853 - -
Csa05g00308 853 SUPERFAMILY DNA-binding domain 158 211 IPR016177 GO:0003677
Csa05g00308 853 MobiDBLite consensus disorder prediction 52 75 - -
Csa05g00308 853 MobiDBLite consensus disorder prediction 311 334 - -
Csa05g00308 853 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 76 149 IPR001739 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00308 - - - csv:101223188 1692.94
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa03g01700 Csa05g00308 CCT
Csa03g01700 Csa05g00308 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02420 Csa-Chr1:21468607 Csa05g00308 Csa-Chr5:1939207 8.02E-06 transposed
Csa03g01700 Csa-Chr3:12767575 Csa05g00308 Csa-Chr5:1939207 2.29E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g651 . . Bda05g00063 . Bpe03g00292 . . . Cmo16g00136 Cmo18g01264 . . . . Sed01g3910 . Cpe14g00111 Bhi01g01334 Tan01g0265 Cmetu09g1530 . Hepe07g0168 Mch10g0165 . Cla01g00286 Cam01g0298 Cec01g0291 Cco01g0304 Clacu01g0297 Cmu01g0284 Cre09g2225 . . . . Lsi05g01239 Csa05g00308 Chy09g01198 . Blo07g00416 . . . . . . . . . . Cma16g00131 Cma18g01241 . Car18g01146 Cpe09g00096 . Bhi12g00219 . . . . . . Cla05g00869 Cam05g0957 Cec05g0962 Cco05g0962 Clacu05g0943 Cmu05g0901 Cre05g0985 . Csa03g01700 Chy06g00936 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010700 0 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00308 Csa_Chr05 FPKM 0.458143 0.0 2.991817 2.764568 2.690765 4.093445 4.025299 3.104568 3.101761 2.911368