Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00314 ATGGCCATCTCTTATATTTGCTTTCTCTTCTTTCTTTCTTTCTTTCCTCACAGCCATGCAGCTACTTTTCAAATCCGCAACAACTGCCCCTTCGCTGTTTGGGCTGCTGCCGTACCCGGTGGCGGACGACGACTTAATCAGAACGATGTTTGGACACTTAACGTGAATCCCGGCACTGTTGCTGCTCGTATTTGGGCTCGAACTAACTGCAACTTCGACGGTTCGGGCCGTGGTAGATGTCAGACCGGTGATTGTGGTGGCCTCCTCCAATGCCAAGCTTACGGTACTCCGCCGAATACCCTTGCCGAATATGCGTTGAATCAATTCAATAACTTAGACTTCTTCGATATCTCTCTCATCGATGGGTTTAACGTCCCTATGGAGTTCAGTCCAACTTCTGGCGGATGCGCTCGTGGCATCAGGTGCACTGCGGACATCAACGGGCAGTGCCCGAACGAGCTTAGGGCTCCTGGAGGGTGTAACAACCCGTGTACTGTGTTCGGCGGGGATCGATACTGCTGCACGGCCCCAAACAGCAGCTGTGGGCCGACGGATTACTCTAGGTTCTTCAAGAATCGTTGCCCAGATGCATATAGTTACCCAAAAGATGATGCAACCAGCACATTCACTTGCCCTGGGGGAACCAACTATAGGGTTGTTTTCTGCCCTTAA 672 51.49 MAISYICFLFFLSFFPHSHAATFQIRNNCPFAVWAAAVPGGGRRLNQNDVWTLNVNPGTVAARIWARTNCNFDGSGRGRCQTGDCGGLLQCQAYGTPPNTLAEYALNQFNNLDFFDISLIDGFNVPMEFSPTSGGCARGIRCTADINGQCPNELRAPGGCNNPCTVFGGDRYCCTAPNSSCGPTDYSRFFKNRCPDAYSYPKDDATSTFTCPGGTNYRVVFCP* 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1961108 1962482 - CsaV3_5G003140.1 Csa05g00314 528701

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00314 223 ProSiteProfiles Thaumatin family profile. 20 223 IPR001938 -
Csa05g00314 223 ProSitePatterns Thaumatin family signature. 76 91 IPR017949 -
Csa05g00314 223 CDD TLP-P 23 223 - -
Csa05g00314 223 SMART tha2 23 223 IPR001938 -
Csa05g00314 223 PRINTS Pathogenesis-related protein signature 22 34 IPR001938 -
Csa05g00314 223 PRINTS Pathogenesis-related protein signature 41 50 IPR001938 -
Csa05g00314 223 PRINTS Pathogenesis-related protein signature 63 74 IPR001938 -
Csa05g00314 223 PRINTS Pathogenesis-related protein signature 76 105 IPR001938 -
Csa05g00314 223 PRINTS Pathogenesis-related protein signature 113 129 IPR001938 -
Csa05g00314 223 PRINTS Pathogenesis-related protein signature 213 222 IPR001938 -
Csa05g00314 223 Gene3D Thaumatin 20 223 IPR037176 -
Csa05g00314 223 PIRSF PR5 1 223 IPR001938 -
Csa05g00314 223 Pfam Thaumatin family 27 223 IPR001938 -
Csa05g00314 223 PANTHER OS03G0233200 PROTEIN 6 223 IPR001938 -
Csa05g00314 223 PANTHER THAUMATIN-LIKE PROTEIN 6 223 - -
Csa05g00314 223 SUPERFAMILY Osmotin, thaumatin-like protein 20 223 IPR037176 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00314 - - - csv:101202921 486.878
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01914 Csa-Chr4:18939663 Csa05g00314 Csa-Chr5:1961108 1.89E-100 dispersed
Csa05g00314 Csa-Chr5:1961108 Csa03g00075 Csa-Chr3:614891 7.68E-52 dispersed
Csa05g00312 Csa-Chr5:1957038 Csa05g00314 Csa-Chr5:1961108 3.43E-20 proximal
Csa05g00313 Csa-Chr5:1959131 Csa05g00314 Csa-Chr5:1961108 1.91E-10 tandem
Csa05g00314 Csa-Chr5:1961108 Csa05g00315 Csa-Chr5:1964512 3.94E-140 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g388 . . . . . . . . . . . Cma15g01207 . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00314 . . . . . . . Bpe11g00682 . . . . Cmo15g01272 . . . . . Cpe13g00169 . . . . . . . Cla01g00291 Cam01g0302 Cec01g0294 Cco01g0309 Clacu01g0302 Cmu01g0287 Cre09g2220 Lsi09g00294 . . Cme09g01729
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000769 1 3 0 2 2 1 3 4 2 3 2 2 6 4 3 7 2 3 2 3 3 4 5 2 6 4 5 3 2 3 92
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00314 Csa_Chr05 FPKM 0.322275 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0