Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00315 ATGGGTATCTCTAACATTTGTTTTCTCTTATTTCTTTCTCTTATTCCTTTCTATTCCCACACCCATGCAGCTACTTTTGAAGTCCACAACAACTGCCCCTTCACTCTTTGGGCTGCCGCCGTACCCGGTGGCGGACAACAACTCAATCAAAACGATGTTTGGATATTTGACGTGAATCCCGGCACTGCTGCCGCACGTGTTTGGGCTCGAACTAATTGCAACTTCGACGATTCCGGTAATGGTGGATGTGAGACTGGCGACTGTGGTGGTCTCCTCCAGTGCCAAGGATATGGCAGTCCGCCCAACACCCTCGCTGAATACGCGTTGAACCAATTCAATAACTTGGACTTCTTCGATATCTCTCTCGTCGATGGGTTTAACGTTCCATTGGAGTTCAGCCCCACATCTGGTGATTGTCGAGGCATCAGTTGCAATGCAGACATCAATGGACAGTGCCCGAACGAGCTTAGGGCTTCTGGAGGGTGCAACAACCCGTGCACCGTGTTCGGTGGTGATCAATACTGCTGCACCGACCCGAACAGCAGCTGTGGGCCGACGGATTACTCAAGATTCTTCAAGGATAGGTGCCCAGATGCATATAGTTACCCAAAAGACGATGCAACCAGCACATTCACTTGCCCTGGGGGAACCAACTATAGGGTCGTCTTCTGCCCCTAA 678 50.59 MGISNICFLLFLSLIPFYSHTHAATFEVHNNCPFTLWAAAVPGGGQQLNQNDVWIFDVNPGTAAARVWARTNCNFDDSGNGGCETGDCGGLLQCQGYGSPPNTLAEYALNQFNNLDFFDISLVDGFNVPLEFSPTSGDCRGISCNADINGQCPNELRASGGCNNPCTVFGGDQYCCTDPNSSCGPTDYSRFFKDRCPDAYSYPKDDATSTFTCPGGTNYRVVFCP* 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1964512 1965320 - CsaV3_5G003150.1 Csa05g00315 528702

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00315 225 PRINTS Pathogenesis-related protein signature 25 37 IPR001938 -
Csa05g00315 225 PRINTS Pathogenesis-related protein signature 44 53 IPR001938 -
Csa05g00315 225 PRINTS Pathogenesis-related protein signature 66 77 IPR001938 -
Csa05g00315 225 PRINTS Pathogenesis-related protein signature 79 108 IPR001938 -
Csa05g00315 225 PRINTS Pathogenesis-related protein signature 116 132 IPR001938 -
Csa05g00315 225 PRINTS Pathogenesis-related protein signature 215 224 IPR001938 -
Csa05g00315 225 SMART tha2 26 225 IPR001938 -
Csa05g00315 225 PANTHER OS03G0233200 PROTEIN 7 225 IPR001938 -
Csa05g00315 225 ProSiteProfiles Thaumatin family profile. 23 225 IPR001938 -
Csa05g00315 225 Pfam Thaumatin family 30 225 IPR001938 -
Csa05g00315 225 PIRSF PR5 2 225 IPR001938 -
Csa05g00315 225 PANTHER PROTEIN P21 7 225 - -
Csa05g00315 225 ProSitePatterns Thaumatin family signature. 79 94 IPR017949 -
Csa05g00315 225 Gene3D Thaumatin 23 225 IPR037176 -
Csa05g00315 225 SUPERFAMILY Osmotin, thaumatin-like protein 23 225 IPR037176 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00315 - - - csv:101218149 491.886
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00312 Csa-Chr5:1957038 Csa05g00315 Csa-Chr5:1964512 5.90E-22 dispersed
Csa05g00313 Csa-Chr5:1959131 Csa05g00315 Csa-Chr5:1964512 2.63E-10 dispersed
Csa05g00315 Csa-Chr5:1964512 Csa05g02410 Csa-Chr5:26166270 2.22E-55 dispersed
Csa05g00314 Csa-Chr5:1961108 Csa05g00315 Csa-Chr5:1964512 3.94E-140 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g392 . . . . . . . . . . . Cma15g01205 . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00315 . . . . . . . . . . . . Cmo15g01271 . . . . . . . . . . . . . . . . . . . . Lsi09g00295 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000769 1 3 0 2 2 1 3 4 2 3 2 2 6 4 3 7 2 3 2 3 3 4 5 2 6 4 5 3 2 3 92
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00315 Csa_Chr05 FPKM 49.681011 54.031643 6.851162 7.234426 43.025097 41.149712 43.546925 6.043502 6.031827 6.32464