Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00318 ATGTCCAATCAAGATCTTGAGCGAGGAGCCGCTAAGAATCCACCCAATACTAACCCAAATGCTAACTATTCAACTTCTCCTTACTACCTAGAAACCTCTGAGAAGCAATGGACTCCTTGGTTGGTTCCTATGTTTGTTGTGGCTAATATTGCTATGTTCATTGTGGTCATGTATGTCAATAATTGCCCTGATTCTAATCTGGGTTTTGGAGATAAGTGTGTGGCTAGTTTTCTTGGACGATTTTCGTTTCAGCCTATCAGGGAGAACCCCCTCTTGGGGCCTTCTTCAAATACATTGGTGAAATTGGGAGCTCTTAAGTGGAACAAGGTTGTTCATGAGCATCAAGGATGGAGACTTTTGTCTTGTATCTGGTTGCACGCTGGAATCATTCATCTTCTTGCCAATATGTTGAGTTTGGTTCTGATTGGAATCCGCCTCGAGCAACAATTTGGATTTGTGCGTATCGGGATGATATACCTTGTGGCTGGAGTTGGTGGGAGTGTGATGTCTTCTCTTTTCATTCAAAACAATATTTCTGTTGGTGCTTCTGGTGCCCTCTTTGGACTTCTTGGAGCTATGCTATCCGAGCTTTTGACAAACTGGACGATTTACACCAACAAGGTTGCTGCACTCTTCACCCTCATAGTCATCGTTGTTATTAACTTAGCAGTTGGAATTCTACCTCACGTTGACAACTTCGCCCACATTGGAGGATTCTTAACAGGGTTCCTTCTCGGGTTTGTTTTGCTTGTCCGCCCACAGTTCAAGTGGACAGAGCGCCACCATCTCCCACCTGGTGCTCGACGTGTACCCAAGTATAAAACTTATCAGTATATTCTCTGGCTGGCAGCTGCAATTCTACTAGTTGCTGGCTTTACCCTGGGCCTGGTGATGCTATTCAGAGGTGAGAATGGAAACAAGCACTGCAGCTGGTGCCATTACCTGAGTTGTGTGCCAACCTCAAGATGGGACTGCGCAAATTAA 984 45.02 MSNQDLERGAAKNPPNTNPNANYSTSPYYLETSEKQWTPWLVPMFVVANIAMFIVVMYVNNCPDSNLGFGDKCVASFLGRFSFQPIRENPLLGPSSNTLVKLGALKWNKVVHEHQGWRLLSCIWLHAGIIHLLANMLSLVLIGIRLEQQFGFVRIGMIYLVAGVGGSVMSSLFIQNNISVGASGALFGLLGAMLSELLTNWTIYTNKVAALFTLIVIVVINLAVGILPHVDNFAHIGGFLTGFLLGFVLLVRPQFKWTERHHLPPGARRVPKYKTYQYILWLAAAILLVAGFTLGLVMLFRGENGNKHCSWCHYLSCVPTSRWDCAN* 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1979521 1982356 + CsaV3_5G003180.1 Csa05g00318 528705

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00318 327 PANTHER RHOMBOID-RELATED 3 327 IPR002610 GO:0004252|GO:0006508|GO:0016021
Csa05g00318 327 SUPERFAMILY Rhomboid-like 36 256 IPR035952 -
Csa05g00318 327 Gene3D - 72 254 IPR035952 -
Csa05g00318 327 PANTHER RHOMBOID-LIKE PROTEIN 3 327 - -
Csa05g00318 327 Pfam Rhomboid family 111 252 IPR022764 GO:0004252|GO:0016021
Csa05g00318 327 MobiDBLite consensus disorder prediction 1 23 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00318 - - - csv:101203649 624.78
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa03g01690 Csa05g00318 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02425 Csa-Chr1:21517907 Csa05g00318 Csa-Chr5:1979521 3.40E-153 dispersed
Csa03g03180 Csa-Chr3:29400404 Csa05g00318 Csa-Chr5:1979521 2.84E-145 dispersed
Csa03g04435 Csa-Chr3:38702726 Csa05g00318 Csa-Chr5:1979521 2.91E-07 dispersed
Csa04g00881 Csa-Chr4:6320500 Csa05g00318 Csa-Chr5:1979521 1.82E-12 dispersed
Csa05g00318 Csa-Chr5:1979521 Csa07g02160 Csa-Chr7:20522574 1.50E-91 dispersed
Csa04g01148 Csa-Chr4:9784196 Csa05g00318 Csa-Chr5:1979521 2.25E-06 transposed
Csa03g00352 Csa-Chr3:2906045 Csa05g00318 Csa-Chr5:1979521 0 wgd
Csa03g01690 Csa-Chr3:12665476 Csa05g00318 Csa-Chr5:1979521 9.72E-165 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g614 . Blo15g00159 . . . Bpe07g00948 . . Cmo16g00147 . . Cma15g01202 . Car15g01089 . . Cpe14g00119 . . . . . . . Cla01g00295 Cam01g0306 Cec01g0296 Cco01g0313 Clacu01g0306 Cmu01g0291 Cre09g2217 . . . . Lsi05g01251 Csa05g00318 Chy09g01190 Cme06g00976 . . Bda06g00673 Bda15g00736 . Bpe12g00418 . . . . . Cma16g00141 . . . . Cpe13g00173 Bhi12g00209 . . Lac11g2129 Hepe06g1577 . Lcy12g1689 Cla05g00860 Cam05g0946 Cec05g0951 Cco05g0951 Clacu05g0933 Cmu05g0891 Cre05g0976 . Csa03g01690 Chy06g00923 Cme09g01724
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000228 6 5 4 5 7 5 5 5 5 5 4 5 7 5 5 6 5 6 6 5 5 5 5 5 5 4 5 12 7 4 163
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00318 Csa_Chr05 FPKM 29.70598 28.721258 18.22274 19.128216 26.089367 28.065498 25.898804 7.608369 7.004113 7.591152