Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00319 ATGGGCAAAGCCTTCAAATGGTTCCGCGGCCTTCTCCGTCTCAAGAAACCACACCCATTTCTCAATCCTTCTCCTACTAATTCGAAGCTCAACAACCTCAAATGCCACTTCAAGGATAACGAGAAAACCCACCACCATGACCCCCCCGTCACCTTCCCTCCCATCGTCAAGATCACCACCACCCGACGGACGACGCCCACGGCGGACCCTAACTCTGCTGCCATCAAAATCCAGGCTGCATTTCGTGGATTTCTGGCAAGGAAGGCATTAAGGGCACTAAGAGGGTTGGTGAGACTTCAGGCATTGGTTCGAGGCCATATCGAGAGGAAGCGAACAGCCGAATGGATAAAGAGGATGCAGGCATTACTGAGAGCACAAGCACGGGCACGAGCAGGACGGAGTCAATCTTCTTTCGATTTCTTGCATTCGGATATCAAATTTTCCAGCTTCTCTTCTATTGATCCTGTTACCCCAGAAAAATTTGAGCACAGCCCACATACTAAGAGCACTAGGTTTAAACAGATGCAGAGGAGTGGCTCAAGATTTACAACTATTGATGCTGAAAACATTGATAGAATCCTTGAAATTGAGAATGAAAAAGCTCACTTTAAGTTGAAACCCAAGAGCCTTTTTAGTTCCATCAAGAATGCTCTATCTTCTTCTGATGTGCCTTCAAAAGAGCCTCCAAGTTCATTTTCCTGTGAAACCCAATGTTTTAGTCCATTTAAATTCTCTCATGAAGTTGAGGAGAACTCTTTCTTTTCTGTCTCATCAAGGGGTGGTAGTACAAAGAAAAGCCCCTTCACTCCGGCTAAGAGTGACAGTACGAGAAGCTATTTCAGTGGCGACTCTGAATATCCGAGTTACATGGCCTGTACTGAATCTTCAAGAGCCAAAATGAGATCTCATAGCGCTCCAAGACAGCGTCCTCAGTATGAAAGATCGAGTTCTGCAAAACGGGGTTCTGCTTTCATTGTTGGCGAATCGAGACTAACTGCACAGCAGGTATCAACATTGCGGTCTAATTTTATCGGGAAAGCCTACCCCGGTTCTGGTCGACTGGACAAACTTGGGATGCCTGTGGGTTACAGATACTGA 1098 46.27 MGKAFKWFRGLLRLKKPHPFLNPSPTNSKLNNLKCHFKDNEKTHHHDPPVTFPPIVKITTTRRTTPTADPNSAAIKIQAAFRGFLARKALRALRGLVRLQALVRGHIERKRTAEWIKRMQALLRAQARARAGRSQSSFDFLHSDIKFSSFSSIDPVTPEKFEHSPHTKSTRFKQMQRSGSRFTTIDAENIDRILEIENEKAHFKLKPKSLFSSIKNALSSSDVPSKEPPSSFSCETQCFSPFKFSHEVEENSFFSVSSRGGSTKKSPFTPAKSDSTRSYFSGDSEYPSYMACTESSRAKMRSHSAPRQRPQYERSSSAKRGSAFIVGESRLTAQQVSTLRSNFIGKAYPGSGRLDKLGMPVGYRY* 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1981018 1986144 - CsaV3_5G003190.1 Csa05g00319 528706

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00319 365 Pfam Protein of unknown function (DUF4005) 261 325 IPR025064 -
Csa05g00319 365 ProSiteProfiles IQ motif profile. 71 98 IPR000048 GO:0005515
Csa05g00319 365 ProSiteProfiles IQ motif profile. 94 121 IPR000048 GO:0005515
Csa05g00319 365 Pfam IQ calmodulin-binding motif 72 91 IPR000048 GO:0005515
Csa05g00319 365 MobiDBLite consensus disorder prediction 158 178 - -
Csa05g00319 365 MobiDBLite consensus disorder prediction 255 279 - -
Csa05g00319 365 Gene3D - 70 129 - -
Csa05g00319 365 PANTHER CALMODULIN BINDING PROTEIN IQD22 68 360 - -
Csa05g00319 365 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 71 117 IPR027417 -
Csa05g00319 365 PANTHER IQ-DOMAIN 5-RELATED 68 360 - -
Csa05g00319 365 SMART iq_5 92 113 IPR000048 GO:0005515
Csa05g00319 365 SMART iq_5 69 91 IPR000048 GO:0005515
Csa05g00319 365 MobiDBLite consensus disorder prediction 295 319 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00319 - - - csv:101218387 639.802
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa03g01689 Csa05g00319 CCT
Csa03g01689 Csa05g00319 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00319 Csa-Chr5:1981018 Csa03g01295 Csa-Chr3:9900501 3.60E-26 dispersed
Csa03g01689 Csa-Chr3:12657495 Csa05g00319 Csa-Chr5:1981018 3.48E-34 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g612 . Blo15g00158 Bda05g00058 . Bpe03g00297 . . . Cmo16g00149 . . . . . Sed01g3916 . Cpe14g00120 Bhi01g01353 Tan01g0278 Cmetu09g1857 Lac11g2130 Hepe07g0179 Mch10g0175 . Cla01g00296 Cam01g0307 Cec01g0297 Cco01g0314 Clacu01g0307 Cmu01g0292 Cre09g2216 . . . . Lsi05g01253 Csa05g00319 Chy09g01189 Cme06g00975 . . Bda06g00672 . . . . . . . . Cma16g00142 . . . . . Bhi12g00208 . . Lac11g2130 Hepe06g1578 . Lcy12g1690 Cla05g00859 Cam05g0945 Cec05g0950 Cco05g0950 Clacu05g0932 Cmu05g0890 Cre05g0975 . Csa03g01689 Chy06g00922 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007128 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00319 Csa_Chr05 FPKM 37.83308 39.220627 36.486507 29.258892 31.639544 31.900547 31.365667 82.968033 83.52388 79.010651