Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00324 ATGGCTGACCAAAAGACGCTTCCAATTAATGAGGGCCAAATAGACCAATCTCTTGATCATAAATCTTCTTCTCCAATATCTAAACCAATTCCCATTGACCCTTTTGTTTCTTCTTCTGTCCCCACTCCCCAAAATCCAAATTCTAAGTCACAAGAACAACTCCCACCACCACCACCTCCTCCTCCTCCTCCTCCATCATCCCTGCCTTCTTCTATAATTTCTCCTCCCCCTCCTTCTTCAACAAATAAGAAGCACTCTTTGTATAGAGGGATCCGGTGCCGAAGTGGGAAATGGGTGTCGGAGATTCGCGAGCCACGTAAGACGACGCGCATATGGCTTGGTACGTTTCCAACTGCTGAGATGGCTGCTACTGCTTACGATGTTGCTGCCCTTGCCCTCCGTGGTGGCGATGCTGTCCTTAACTTCCCTGCCTCCATTCCAACCTACCCTGTTCCCGCTTCGACTTCTCCAGTTGACATTCGCACTGCTGCCTCCACTGCCGCTATTGCTGCAGCTGCTAAGGCGGTGAAGAAAGTTTCGTCAACTTCTTCGGTTGACGTAGGCACTATGGAAGATTGTAGCAAGAAGATGAGGATAGAGGAGTTTGTGGATGAAGAAGAAATTTTTGGGATGCCGGGTTTGCTGGCGGATATGGCGGAGGGGATGATGGTGTCGCCGCCGAGAATGAACTCGCCACCACTGTCGGATGACTTGATGGAAAATTCTGATGGAACGGAAAGTTTATGGAGCTACTTTTGA 759 49.28 MADQKTLPINEGQIDQSLDHKSSSPISKPIPIDPFVSSSVPTPQNPNSKSQEQLPPPPPPPPPPPSSLPSSIISPPPPSSTNKKHSLYRGIRCRSGKWVSEIREPRKTTRIWLGTFPTAEMAATAYDVAALALRGGDAVLNFPASIPTYPVPASTSPVDIRTAASTAAIAAAAKAVKKVSSTSSVDVGTMEDCSKKMRIEEFVDEEEIFGMPGLLADMAEGMMVSPPRMNSPPLSDDLMENSDGTESLWSYF* 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2025742 2027282 + CsaV3_5G003240.1 Csa05g00324 528711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00324 252 Pfam AP2 domain 87 135 IPR001471 GO:0003700|GO:0006355
Csa05g00324 252 MobiDBLite consensus disorder prediction 50 76 - -
Csa05g00324 252 SUPERFAMILY DNA-binding domain 86 145 IPR016177 GO:0003677
Csa05g00324 252 CDD AP2 86 145 IPR001471 GO:0003700|GO:0006355
Csa05g00324 252 MobiDBLite consensus disorder prediction 9 24 - -
Csa05g00324 252 PANTHER ETHYLENE RESPONSE FACTOR 79 252 - -
Csa05g00324 252 MobiDBLite consensus disorder prediction 1 87 - -
Csa05g00324 252 ProSiteProfiles AP2/ERF domain profile. 87 143 IPR001471 GO:0003700|GO:0006355
Csa05g00324 252 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 79 252 - -
Csa05g00324 252 Gene3D AP2/ERF domain 87 145 IPR036955 GO:0003700|GO:0006355
Csa05g00324 252 SMART rav1_2 87 149 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g01677 Csa05g00324 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01677 Csa-Chr3:12561499 Csa05g00324 Csa-Chr5:2025742 4.77E-46 dispersed
Csa03g03387 Csa-Chr3:30556186 Csa05g00324 Csa-Chr5:2025742 1.49E-45 dispersed
Csa05g00324 Csa-Chr5:2025742 Csa05g00589 Csa-Chr5:3899628 1.02E-39 dispersed
Csa05g00324 Csa-Chr5:2025742 Csa05g00325 Csa-Chr5:2039646 3.10E-35 tandem
Csa03g00371 Csa-Chr3:3131985 Csa05g00324 Csa-Chr5:2025742 6.62E-61 transposed
Csa03g01676 Csa-Chr3:12548365 Csa05g00324 Csa-Chr5:2025742 1.30E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31677 PF00847 AP2 2.20E-10 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00324 - - csv:101204373 411.379