Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00325 ATGCGCAGCTCACACGCTCTAAGTTACAAATCTGAATCTTCTTCCACTCTTTCTGACGCCGGAACACCTCCTCCTCAAACGCTGGTTAACTCTGACGAAGAAGTTATTCTCGCCTCCAACCGCCCAAAGCGTCGTGCAGGTCGTCGAATTTTTAAAGAAACTAGACATCCGGTTTACAGAGGAGTCCGTCAAAGGAATAACGATAAGTGGGTTTGTGAGCTGAGAGAGCCGAATAAGAAGACGAGGATTTGGCTCGGGACATACCCAACAGCAGAGATGGCAGCTCGTGCACATGACATAGCTGCACTAGCGTTAAGAGGGAAATCAGCTTGCCTCAATTTTGCTGACTCTGCTTGGCGGTTTCCGATTCCAACGAGTGATGACCCGACTGTGATTAGAGAGGCGGCAGCAAGGGCGGCGAATGAATGTAATGTGGGTAGGGAAGAGGATGAGGGCGGTTTGAATCAGCCGGACACGTACCCTGACGGAACGGATTATGTGGATGATGAGGCTATGTCAAATATGCCAATGTTGCTTGCCAACATGGCAGAAGGACTACTGCTATCTCCTCCATCTTTTTGTGTCAACGATGACGTAGAGTGGGACGATGAGGCAATGAACGACGATGTGTCATTGTGGAACTTCTAG 648 49.38 MRSSHALSYKSESSSTLSDAGTPPPQTLVNSDEEVILASNRPKRRAGRRIFKETRHPVYRGVRQRNNDKWVCELREPNKKTRIWLGTYPTAEMAARAHDIAALALRGKSACLNFADSAWRFPIPTSDDPTVIREAAARAANECNVGREEDEGGLNQPDTYPDGTDYVDDEAMSNMPMLLANMAEGLLLSPPSFCVNDDVEWDDEAMNDDVSLWNF* 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2039646 2041467 + CsaV3_5G003250.1 Csa05g00325 528712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00325 215 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 7 215 IPR045277 GO:0003700
Csa05g00325 215 MobiDBLite consensus disorder prediction 1 32 - -
Csa05g00325 215 Pfam AP2 domain 57 107 IPR001471 GO:0003700|GO:0006355
Csa05g00325 215 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1F 7 215 - -
Csa05g00325 215 ProSiteProfiles AP2/ERF domain profile. 58 115 IPR001471 GO:0003700|GO:0006355
Csa05g00325 215 Gene3D AP2/ERF domain 58 116 IPR036955 GO:0003700|GO:0006355
Csa05g00325 215 PRINTS Ethylene responsive element binding protein signature 59 70 IPR001471 GO:0003700|GO:0006355
Csa05g00325 215 PRINTS Ethylene responsive element binding protein signature 81 97 IPR001471 GO:0003700|GO:0006355
Csa05g00325 215 SMART rav1_2 58 121 IPR001471 GO:0003700|GO:0006355
Csa05g00325 215 CDD AP2 59 117 IPR001471 GO:0003700|GO:0006355
Csa05g00325 215 SUPERFAMILY DNA-binding domain 58 117 IPR016177 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01676 Csa-Chr3:12548365 Csa05g00325 Csa-Chr5:2039646 6.44E-67 dispersed
Csa03g03388 Csa-Chr3:30563653 Csa05g00325 Csa-Chr5:2039646 2.95E-43 dispersed
Csa05g00325 Csa-Chr5:2039646 Csa05g00589 Csa-Chr5:3899628 8.22E-61 dispersed
Csa05g00324 Csa-Chr5:2025742 Csa05g00325 Csa-Chr5:2039646 3.10E-35 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31678 PF00847 AP2 4.50E-14 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00325 - - csv:101204618 412.535