Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00330 ATGGTTGCCTTTGGAAAGAAGTTGAAGGAAAGACAGATTGAAGAATGGCAAGGATATTACATCAATTATAAACTTATGAAGAAGAAGGTAAAACAATATGCTCAACAAATGGAAGTTGGAACACAAGATCGTCGGCACGTTCTCAAGGATTTTTCAAGAATGCTGGACAACCAGATTGAGAAGATTGTACTTTTTCTGCTGGAGCAACAAGGCCTTCTTGCAAGCCGTATAGCCAAACTTGATGAACGGCTTGATGTTCTTCAAGAAGAACCTGAAATATCCCAGATAACTGAATTGAGAGAAGCTTACAGAGAAGCTGGCCAAGATCTTTTAAAGCTTCTATATTTTGTTGAGATAAATGCAATTGGCCTGCGTAAAATTTTGAAAAAATTTGACAAGCGGTTTGGCTATAAATTTACCGATTACTATGTCAAAACACGGGCCAACCATCCTTACTCCCAGCTGCAGCAAGTTTTCAAACACGTGGGAATAGGAGCTGTTGTTGGAGCCATATCGCGGAACTTGCATGAACTCCAGGACCGTCAAGGAAGAAGCTATCTATCAATATATGATCAGCCTGTTCTTCCTCTCCAGGACCCTGTAATTGATTCAATTAGAGCTGCTGTGGACAGGCTAAGTAACTCAACAAACTTCCTGAACTTTTTAGCACAGCATGCCCTCATTATGCAGGAAGAATTGCCTGCTCCTATTGGGGAACAAGTCGATGATAGCAGTTATCACTCCATGTCTCTTTTCTTGAACCTCGCAAATACCTTCCTATACATGGTCAATACATATATTGTAGTCCCAACAGCTGATGACTACTCCATGAGCCTTGGAGCTGCAGCGACTGTATGTGGTATTGTAATTGGAGCAATGGCAGTTGCACAAGTGTTCTCATCAGTTTATTTTAGTGCATGGTCGAATAGATCTTACTTCAGACCTCTAATATTTAGCAGTATAGCTCTCTTTCTCGGGAACTTGTTATATGCTCTTGCTTATGACCTTCAATCACTCTGGGTTCTTTTGATTGGACGGCTTTGCTGTGGGTTGGGTTCTGCTCGGGCTGTTAATAGGCGCTATATCAGTGATTGTGTGCCACTAAAAATTCGCATGCAAGCATCAGCAGGCTTTGTTAGTGCCAGTGCTCTAGGAATGGCTTGTGGTCCAGCTCTGGCCGGATTACTTCAAACGAAGTTTAAGATTTACAAGCTTACTTTTAATCAAAACACTTTGCCTGGTTGGGTTATGGCTGTGGCGTGGCTAATGTATCTAATATGGTTGTGTATCTCATTTCGTGAACCTTCACGGGAAAGTGAAGAGAATACACCACAGGAATCACATCAAGTTCAAAATGATACACTCGAAAAGGGTCTTCACCAGCCATTGCTTATAACTTCACTGGAGAAGCCATCAGATGAAGATGGTGACCCAGAAGTTGATGACAGTGAAGAAGCGCCCGAGGAATCTCGCCTACCAGTGACCTCTATTGGCTCAGCTTATAGATTACTTACTCCTTCTGTTAAGGTTCAATTATTGATATATTTCATGCTCAAATATGCAATGGAAGTTTTGCTTTCGGAGTCTAGTGTTGTTACCACATACTACTTCGGTTGGTCCACAAGCTCTGTGGCAATTTTTCTGGCATGCCTTGGTCTGACAGTTCTCCCGGTGAATATCTTTGTTGGTAGTTACATTAGCAACATGTTTGAAGATAGACAAATACTGTTGGTGTCAGAAGTTCTTGTCTTGATAGGCATCCTTTTAAGCTTCAATGTAATAGTTCCATACTCTGTGGTTCAATATGTGGGCTCTGGACTTATCATGTTTGTGTCGGCAGAAGTGCTTGAAGGCGTGAACCTTGCACTTCTCTCACGAGTCATGTCATCTCGACTTTCACGTGGTACATATAATGGTGGATTGTTATCAACAGAAGCTGGGACTATTGCGCGAGTAATTGCAGATGGAACTATAACCCTTGCTGGTTACTTAGGCCGAAGTAGGCTCTTGAATGTTACACTCATTCCCTCCCTCCTCATTTGTGTAGTCTCCATTCTTTCCACCTGCTACACCTACAACTCTCTATACTGA 2091 42.09 MVAFGKKLKERQIEEWQGYYINYKLMKKKVKQYAQQMEVGTQDRRHVLKDFSRMLDNQIEKIVLFLLEQQGLLASRIAKLDERLDVLQEEPEISQITELREAYREAGQDLLKLLYFVEINAIGLRKILKKFDKRFGYKFTDYYVKTRANHPYSQLQQVFKHVGIGAVVGAISRNLHELQDRQGRSYLSIYDQPVLPLQDPVIDSIRAAVDRLSNSTNFLNFLAQHALIMQEELPAPIGEQVDDSSYHSMSLFLNLANTFLYMVNTYIVVPTADDYSMSLGAAATVCGIVIGAMAVAQVFSSVYFSAWSNRSYFRPLIFSSIALFLGNLLYALAYDLQSLWVLLIGRLCCGLGSARAVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTKFKIYKLTFNQNTLPGWVMAVAWLMYLIWLCISFREPSRESEENTPQESHQVQNDTLEKGLHQPLLITSLEKPSDEDGDPEVDDSEEAPEESRLPVTSIGSAYRLLTPSVKVQLLIYFMLKYAMEVLLSESSVVTTYYFGWSTSSVAIFLACLGLTVLPVNIFVGSYISNMFEDRQILLVSEVLVLIGILLSFNVIVPYSVVQYVGSGLIMFVSAEVLEGVNLALLSRVMSSRLSRGTYNGGLLSTEAGTIARVIADGTITLAGYLGRSRLLNVTLIPSLLICVVSILSTCYTYNSLY* 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2084005 2092264 + CsaV3_5G003300.1 Csa05g00330 528717

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00330 696 Gene3D MFS general substrate transporter like domains 247 691 IPR036259 -
Csa05g00330 696 CDD SPX-MFS_plant 2 141 IPR045264 -
Csa05g00330 696 ProSiteProfiles SPX domain profile. 2 145 IPR004331 -
Csa05g00330 696 PANTHER SPX DOMAIN, MAJOR FACILITATOR SUPERFAMILY-RELATED 1 694 - -
Csa05g00330 696 PANTHER INNER MEMBRANE TRANSPORT PROTEIN YAJR 1 694 - -
Csa05g00330 696 SUPERFAMILY MFS general substrate transporter 251 665 IPR036259 -
Csa05g00330 696 Pfam Major Facilitator Superfamily 257 637 IPR011701 GO:0022857|GO:0055085
Csa05g00330 696 MobiDBLite consensus disorder prediction 468 492 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00330 - - - csv:101205586 1348.95
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00330 Csa-Chr5:2084005 Csa06g00900 Csa-Chr6:7249890 2.12E-08 dispersed
Csa05g00330 Csa-Chr5:2084005 Csa06g00589 Csa-Chr6:5022224 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g410 . Blo03g00191 Bda06g00068 . . Bpe07g00130 . . . . Cma02g01489 . Car02g01247 Car15g01080 . . . . . . . . . . . . . . . . . . . Cone6ag0743 Cone9ag0747 . Csa05g00330 Chy09g01179 . Blo03g00375 Blo19g00307 Bda07g00500 Bda09g00060 Bpe08g01473 Bpe11g00689 . Bma12g00106 . Cmo02g01528 . . . . . . Cpe13g00182 Bhi12g00191 . . . . . . Cla01g00307 Cam01g0319 Cec01g0310 Cco01g0327 Clacu01g0320 Cmu01g0305 Cre09g2204 Lsi09g00316 . . Cme09g01712
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001441 6 3 4 1 4 2 3 2 2 2 1 2 3 2 1 3 2 3 2 2 2 2 1 1 1 2 2 3 6 2 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00330 Csa_Chr05 FPKM 0.0 0.0 2.077645 3.739627 2.155086 1.538745 2.536121 0.0 0.0 0.167054