Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00332 ATGCAGTCTCCTTGTATTAGAGAGGCTTCACAGGCCTGCCTTCGAGGCTGCTGTCGAACCCCATTTCTCGGTCTTACTGATTCTTCACAGACTGCAATTGACAGATCTTCTGCAGCTTCAACTCCTGCATACAACTTTCATGGCACAACGGAAACATCTCTTCATCCAGATGCTCGATTCTCCGATCATGAATCCATCCCTACCCTAAAGGATGCTTTTACTTACTTCATTAGGGCATACCCTCTCTACCTTGACACACAACAGATCGACCGAATCCGAGCTGATGAATACAATCATCTTGCTCTCTCCAAACATGTTTGTCTCGATTACAATGGTCAGTGTCTCTTTTCTTTTGCTCAACAGCAGAGTTCTCCAATGGCTCCAGCTGCTTCTTCCTCTTCTCCACCAGGCTCCCCTCCTCTAATTCTGCATTCCCCAGGATCACCATTCTTCAACATTTCCCATAAAGCAGTCAAACCAAATTCCCAGGTGAAGAATGGTGGTCAAGAATCAGAATTTGAGTCTAGAATTAGAAGTAGAATTATGAAGTTTATGAACTTATCAGAAGATGATTATGCTATGGTGTTCACAGCCAATCAATCATCAGCCTTCAAACTACTAGCAGACACTTACCCTTTTCAGCAGAACAGAAATTTGATCACAGTTTATGATCACGAGAGTGAGGCAGTTGATTTGATGGTTGAAAGCTCCAGGAAGAAAGGAGCAAGAATCTATTCCGCAGAGTTCTTATGGCCAAACCTAAACATCTCTACCGGAAAATTAAGAAGACTAATAGTCAGTAAACGGAAGAGGAAGAAGAAGATGAAGATGAAGATGAACAAAAGGGGGTTATTTGTACTCCCACTTCAGTCAAGATTAACAGGAACCCCATATTCATATCAATGGCTGAACATAGCTCGAGATAACGAATGGGATGTCTGCCTAGATACATGTGCACTAGGGCCAAAAGACATGGAAACTTTAGGCCTCTCGCTTTTCAAGCCTGAATTTCTAATTTCTTCTTTCTACAAAGTTTTTGGCGAAAACCCATCGGGGTTTGGTTGTTTGTTCATCAAGAAATCCAATGTTTCATTGATGGAGAGTTTACTCACCTCCCCTGCAAACATTGGCGTTATAACTCTTATCTCAACATCACCATCATTTCCATTTACAGAAGAACCTGAAACTACAGAAACCAAAACTCAACAAATTTCAAAACCCACCCTAGAAATTCAAAATCTAGCTATACCAGAGTCGCGAAATTCACCTGAAATCACTGAAGCCACAGAAATCGAAGAGGAAGAACTCTCAATCACAGGAATTGTCGAATCGACAACACCTTTCGTATCCACTCGATCAACCAACACAGAAATGAACTCATACATGGATTGCAGAGGCTTAGATCATGCAGATTCAGTAGGTCTAAGATTAATAAGCATTAGAGCAAGATACCTGATCAATTGGCTAACAAATGCATTGATGAATCTACAACACCCGAATCCAGAAGGAAGGATTGCTAAAGCTCTAGTGAGAATCTACGGCCCGAAAATCGAAATCAATCGAGGACCCGCCGTGGCATTCAACATATTCGACTGGAAAGGGGAAAAAGTAGACCCAGCAATGGTTCAGAAGCTTGCTGATCGGAGCAATATTTCGTTGAGCAATGGAATTGTGAAGGAGGCGAAGGATAGCATAAGGAAAGGAGTTGAGCACGCATATGTTCAAACTACTTGTTGA 1737 41.97 MQSPCIREASQACLRGCCRTPFLGLTDSSQTAIDRSSAASTPAYNFHGTTETSLHPDARFSDHESIPTLKDAFTYFIRAYPLYLDTQQIDRIRADEYNHLALSKHVCLDYNGQCLFSFAQQQSSPMAPAASSSSPPGSPPLILHSPGSPFFNISHKAVKPNSQVKNGGQESEFESRIRSRIMKFMNLSEDDYAMVFTANQSSAFKLLADTYPFQQNRNLITVYDHESEAVDLMVESSRKKGARIYSAEFLWPNLNISTGKLRRLIVSKRKRKKKMKMKMNKRGLFVLPLQSRLTGTPYSYQWLNIARDNEWDVCLDTCALGPKDMETLGLSLFKPEFLISSFYKVFGENPSGFGCLFIKKSNVSLMESLLTSPANIGVITLISTSPSFPFTEEPETTETKTQQISKPTLEIQNLAIPESRNSPEITEATEIEEEELSITGIVESTTPFVSTRSTNTEMNSYMDCRGLDHADSVGLRLISIRARYLINWLTNALMNLQHPNPEGRIAKALVRIYGPKIEINRGPAVAFNIFDWKGEKVDPAMVQKLADRSNISLSNGIVKEAKDSIRKGVEHAYVQTTC* 579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2106404 2108886 + CsaV3_5G003320.1 Csa05g00332 528719

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00332 578 PANTHER MOLYBDENUM COFACTOR SULFURASE-LIKE PROTEIN 3 561 - -
Csa05g00332 578 SUPERFAMILY PLP-dependent transferases 161 569 IPR015424 -
Csa05g00332 578 Gene3D - 153 383 IPR015421 GO:0003824
Csa05g00332 578 PANTHER MOLYBDOPTERIN COFACTOR SULFURASE MOSC 3 561 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00332 - - - csv:101220052 1005.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00332 Csa-Chr5:2106404 Csa05g00561 Csa-Chr5:3673981 1.70E-156 dispersed
Csa05g00332 Csa-Chr5:2106404 Csa02g01508 Csa-Chr2:14374980 1.36E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g414 . . . . . . . . . . Cma02g01490 . Car02g01248 . . . Cpe05g00301 . . . . . . . . . . . . . . . . . Cone15ag0129 . Csa05g00332 Chy09g01177 . . . . . . . . . . Cmo02g01529 . . . . . . . Bhi12g00186 . . Lac11g2149 Hepe06g1593 . Lcy12g1710 Cla01g00309 Cam01g0321 Cec01g0312 Cco01g0329 Clacu01g0322 Cmu01g0307 . Lsi09g00317 . . Cme09g01710
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013740 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 0 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00332 Csa_Chr05 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0