Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa05g00334 | ATGCAAGAACCTGGGTTGGGAATGATGACTGCTGCAGGTGGGTCTAGTGGTGGCTTAAGCGGCGACGTTTCGGTTTCCGGCGAGGGAGTTCATAACAGTCAACTGAAAGCGGAGATTGCTACTCATCCACTTTATGAGCAGCTTCTTTCAGCTCATGTTGCTTGTCTTCGTGTTGCTACTCCGATTGATCAGCTTCCGATGATCGATGCCCAGCTTTCTCAATCCCACCATATTTTGCGCTCTTATGCTTCTTCTCAACAGCATCACCAAAATGCTCATTCCTTAACGCCTCACGAGCGACAAGAGCTTGACAATTTTCTGGCACAGTATATGATCGTTTTGTGTTCTTTCAAAGAGCAGCTTCAACAACATGTGAGAGTCCACGCAGTTGAAGCTGTTATGGCTTGCCGTGAAATTGAAAACACTCTACAAGCTCTTACAGGAGTAAGCCTTGGTGAAGGAACCGGTGCAACAATGTCGGACGACGAAGACGACATTCCGATGGACTTTTCGCTCGATCAATCTGGAGCCGACGCACACGACATGATGGGATTCGGACCACTGCTACCAACTGAATCCGAAAGGTCGCTGATGGAGAGGGTCCGCCAAGAACTGAAGATTGAGCTGAAACAGGGTTTCAAGTCAAGAATTGAAGATGTGAGAGAGGAAATATTGAGAAAGAGAAGGGCAGGGAAGTTACCTGGGGATACAACAACAGTTTTGAAAAACTGGTGGCAGCAACATTCTAAATGGCCATACCCAACTGAAGACGATAAGGCTAAGCTAGTGGAGGAGACAGGTTTGCAGCTGAAACAAATAAACAATTGGTTCATCAACCAAAGGAAGAGAAACTGGCACAGCAACTCTCAGTCAGTGACATCTTTGAAGTCCAAGCGCAAGAGATAA | 906 | 46.69 | MQEPGLGMMTAAGGSSGGLSGDVSVSGEGVHNSQLKAEIATHPLYEQLLSAHVACLRVATPIDQLPMIDAQLSQSHHILRSYASSQQHHQNAHSLTPHERQELDNFLAQYMIVLCSFKEQLQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDEDDIPMDFSLDQSGADAHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR* | 302 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 2116274 | 2120560 | - | CsaV3_5G003340.1 | Csa05g00334 | 528721 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa05g00334 | 301 | Gene3D | - | 223 | 297 | - | - | |
Csa05g00334 | 301 | SMART | HOX_1 | 226 | 291 | IPR001356 | GO:0003677 | |
Csa05g00334 | 301 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Csa05g00334 | 301 | SUPERFAMILY | Homeodomain-like | 226 | 291 | IPR009057 | - | |
Csa05g00334 | 301 | PANTHER | HOMEOBOX PROTEIN KNOTTED-1-LIKE 7 | 2 | 301 | - | - | |
Csa05g00334 | 301 | CDD | homeodomain | 227 | 288 | IPR001356 | GO:0003677 | |
Csa05g00334 | 301 | ProSiteProfiles | ELK domain profile. | 204 | 224 | IPR005539 | GO:0003677 | |
Csa05g00334 | 301 | ProSiteProfiles | 'Homeobox' domain profile. | 224 | 287 | IPR001356 | GO:0003677 | |
Csa05g00334 | 301 | SMART | KNOX2_2 | 93 | 148 | IPR005541 | GO:0003677|GO:0005634 | |
Csa05g00334 | 301 | Pfam | KNOX1 domain | 35 | 76 | IPR005540 | GO:0003677|GO:0005634 | |
Csa05g00334 | 301 | Pfam | KNOX2 domain | 97 | 147 | IPR005541 | GO:0003677|GO:0005634 | |
Csa05g00334 | 301 | Pfam | Homeobox KN domain | 244 | 283 | IPR008422 | GO:0003677|GO:0006355 | |
Csa05g00334 | 301 | SMART | KNOX1_2 | 33 | 77 | IPR005540 | GO:0003677|GO:0005634 | |
Csa05g00334 | 301 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 2 | 301 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa05g00334 | Csa-Chr5:2116274 | Csa07g00330 | Csa-Chr7:2465899 | 5.10E-27 | dispersed | |
Csa05g00334 | Csa-Chr5:2116274 | Csa02g02412 | Csa-Chr2:21279435 | 1.68E-131 | transposed | |
Csa05g00334 | Csa-Chr5:2116274 | Csa04g02662 | Csa-Chr4:25925517 | 2.23E-131 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31679 | PF03791 | KNOX2 | 7.70E-18 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa05g00334 | - | - | csv:101206054 | 574.704 |