Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00334 ATGCAAGAACCTGGGTTGGGAATGATGACTGCTGCAGGTGGGTCTAGTGGTGGCTTAAGCGGCGACGTTTCGGTTTCCGGCGAGGGAGTTCATAACAGTCAACTGAAAGCGGAGATTGCTACTCATCCACTTTATGAGCAGCTTCTTTCAGCTCATGTTGCTTGTCTTCGTGTTGCTACTCCGATTGATCAGCTTCCGATGATCGATGCCCAGCTTTCTCAATCCCACCATATTTTGCGCTCTTATGCTTCTTCTCAACAGCATCACCAAAATGCTCATTCCTTAACGCCTCACGAGCGACAAGAGCTTGACAATTTTCTGGCACAGTATATGATCGTTTTGTGTTCTTTCAAAGAGCAGCTTCAACAACATGTGAGAGTCCACGCAGTTGAAGCTGTTATGGCTTGCCGTGAAATTGAAAACACTCTACAAGCTCTTACAGGAGTAAGCCTTGGTGAAGGAACCGGTGCAACAATGTCGGACGACGAAGACGACATTCCGATGGACTTTTCGCTCGATCAATCTGGAGCCGACGCACACGACATGATGGGATTCGGACCACTGCTACCAACTGAATCCGAAAGGTCGCTGATGGAGAGGGTCCGCCAAGAACTGAAGATTGAGCTGAAACAGGGTTTCAAGTCAAGAATTGAAGATGTGAGAGAGGAAATATTGAGAAAGAGAAGGGCAGGGAAGTTACCTGGGGATACAACAACAGTTTTGAAAAACTGGTGGCAGCAACATTCTAAATGGCCATACCCAACTGAAGACGATAAGGCTAAGCTAGTGGAGGAGACAGGTTTGCAGCTGAAACAAATAAACAATTGGTTCATCAACCAAAGGAAGAGAAACTGGCACAGCAACTCTCAGTCAGTGACATCTTTGAAGTCCAAGCGCAAGAGATAA 906 46.69 MQEPGLGMMTAAGGSSGGLSGDVSVSGEGVHNSQLKAEIATHPLYEQLLSAHVACLRVATPIDQLPMIDAQLSQSHHILRSYASSQQHHQNAHSLTPHERQELDNFLAQYMIVLCSFKEQLQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDEDDIPMDFSLDQSGADAHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR* 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2116274 2120560 - CsaV3_5G003340.1 Csa05g00334 528721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00334 301 Gene3D - 223 297 - -
Csa05g00334 301 SMART HOX_1 226 291 IPR001356 GO:0003677
Csa05g00334 301 MobiDBLite consensus disorder prediction 1 20 - -
Csa05g00334 301 SUPERFAMILY Homeodomain-like 226 291 IPR009057 -
Csa05g00334 301 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 7 2 301 - -
Csa05g00334 301 CDD homeodomain 227 288 IPR001356 GO:0003677
Csa05g00334 301 ProSiteProfiles ELK domain profile. 204 224 IPR005539 GO:0003677
Csa05g00334 301 ProSiteProfiles 'Homeobox' domain profile. 224 287 IPR001356 GO:0003677
Csa05g00334 301 SMART KNOX2_2 93 148 IPR005541 GO:0003677|GO:0005634
Csa05g00334 301 Pfam KNOX1 domain 35 76 IPR005540 GO:0003677|GO:0005634
Csa05g00334 301 Pfam KNOX2 domain 97 147 IPR005541 GO:0003677|GO:0005634
Csa05g00334 301 Pfam Homeobox KN domain 244 283 IPR008422 GO:0003677|GO:0006355
Csa05g00334 301 SMART KNOX1_2 33 77 IPR005540 GO:0003677|GO:0005634
Csa05g00334 301 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 2 301 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00334 Csa-Chr5:2116274 Csa07g00330 Csa-Chr7:2465899 5.10E-27 dispersed
Csa05g00334 Csa-Chr5:2116274 Csa02g02412 Csa-Chr2:21279435 1.68E-131 transposed
Csa05g00334 Csa-Chr5:2116274 Csa04g02662 Csa-Chr4:25925517 2.23E-131 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31679 PF03791 KNOX2 7.70E-18 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00334 - - csv:101206054 574.704