Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00336 ATGGTGAGAGGAAAAACACAAATGAAGAGGATAGAGAATGCTACAAGCAGGCAAGTTACTTTTTCAAAGAGAAGAAATGGGTTACTGAAGAAGGCTTTTGAGCTTTCAGTTCTTTGTGATGCTGAAGTTGCACTTATCATTTTCTCTCCAAGAGGCAAACTTTATGAGTTTTCCAATTGCAGTATGAACAAGACAATTGATCGCTATCAAAACAGAACCAAAGATTTGATGTCAAGTAACAGCACAGCTATTGAAGATGTGCAGTTGGAGAAGGAATACGACTCCTTTAGCATGACTAAGAAGTTAGAGCACCTTGAAGTTTGTAAAAGAAAACTATTGGGAGATGGGTTGGATTTGTGTTCCATTGATGAGTTGCAGCAGCTTGAGAGGCAACTTGAAAGAAGCTTAAGCAAAATTAGGTCAAGAAAGTATCAAATGCTGAAGGATGAAATTATGAAGCTGAAGGAAGAGGAGAAAATGTTGCTGGAAGAAAATGCAGCACTGCAGATTAAGGTTATAAGTGAATCATCAAAAAAACAAGAAAGCAATCAGAGATCAGAATCATCAAACCATGAAGAGATAATGGATGTGGAAACTGAACTATTCATAGGACCACCAGAAAGAAGAAGCAATAATAACAATAACAATAATAATAATGCCTTCCTATAG 669 36.62 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSNCSMNKTIDRYQNRTKDLMSSNSTAIEDVQLEKEYDSFSMTKKLEHLEVCKRKLLGDGLDLCSIDELQQLERQLERSLSKIRSRKYQMLKDEIMKLKEEEKMLLEENAALQIKVISESSKKQESNQRSESSNHEEIMDVETELFIGPPERRSNNNNNNNNNAFL* 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2144062 2149675 + CsaV3_5G003360.1 Csa05g00336 528723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00336 222 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Csa05g00336 222 Pfam K-box region 90 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Csa05g00336 222 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Csa05g00336 222 Coils Coil 122 142 - -
Csa05g00336 222 PANTHER MADS BOX PROTEIN 1 208 - -
Csa05g00336 222 MobiDBLite consensus disorder prediction 178 198 - -
Csa05g00336 222 ProSiteProfiles K-box domain profile. 88 182 IPR002487 GO:0003700|GO:0005634|GO:0006355
Csa05g00336 222 MobiDBLite consensus disorder prediction 206 222 - -
Csa05g00336 222 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Csa05g00336 222 SUPERFAMILY SRF-like 3 81 IPR036879 GO:0003677|GO:0046983
Csa05g00336 222 PANTHER MADS-BOX PROTEIN SOC1 1 208 - -
Csa05g00336 222 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Csa05g00336 222 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Csa05g00336 222 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Csa05g00336 222 Coils Coil 144 171 - -
Csa05g00336 222 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Csa05g00336 222 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Csa05g00336 222 Gene3D - 14 92 IPR036879 GO:0003677|GO:0046983
Csa05g00336 222 MobiDBLite consensus disorder prediction 175 222 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00336 Csa-Chr5:2144062 Csa05g00560 Csa-Chr5:3656105 7.88E-51 dispersed
Csa03g00940 Csa-Chr3:7691745 Csa05g00336 Csa-Chr5:2144062 9.22E-68 wgd
Csa03g01665 Csa-Chr3:12467314 Csa05g00336 Csa-Chr5:2144062 5.41E-53 wgd
Csa05g00336 Csa-Chr5:2144062 Csa06g00602 Csa-Chr6:5105163 9.87E-70 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31680 PF01486 K-box 5.10E-22 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00336 - - csv:101220518 368.622