Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00338 ATGGAAGATCAAGCTCTTCCTCAACGGACCCATCTATCTTCTTCAACATCTTCACCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTATTCAGCTCAATTTACCTTCTTCAATGTCTCGGGCTTCTCACTCACTTGAAACCCTAACCCCATCTCGCCAAATCGACCGTATGATCAATATCAACCACCATTTGTCCCCATCTAGAGCTATTTACTCCGATAGATTCATACCCAGTAGATCTGGTTCTAATTTTGCCCTTTTTGATATCTCCCCTGTTTCCAATTCCCACTCTGATGGTCGTGAGGATACTTCTACTGCTTACGCTACCCTTCTTCGTACTGCTTTGTTTGGTCCTGATTCTGGTGTAATCCCTCCTGCTACTCCTGAGAAGAGAAGCTCCCCAATGTGCCTTCCCAATCATAATATTTTTCGTTATAAGACCGAGACGAGAAGGTCAATGCATTCCCTTTCGCCTTTTGGCTTTGATGCTGCTGCTCCCGGCCTTAATCCCAGTCCGGTTAAGACTCCCAGGAAGGTTCCTCGATCGCCTTATAAGGTCTTGGATGCACCTGCTTTGCAAGATGATTTTTATCTCAATCTTGTGGATTGGTCTTCGCATAACGTGCTGGCTGTGGGGTTGGGTAATTGTGTTTATCTCTGGAATGCTTGCAGTAGTAAGGTCACCAAGTTGTGTGATTTAGGAATTGATGACAGTGTATGTTCAGTGGGCTGGGCACAGCGTGGAACTCATCTTGCTGTTGGCACTAGCAATGGGAAAGTCCAGATTTGGGATGCATCACGCTGTAAAAGGGTTAGGACCATGGAGGGGCATCGGTTACGAATTGGAGCCTTAGCTTGGAGCTCATCACTTTTATCGTCTGGTAGCAGGGACAAAAGTATTCTTCAAAGAGATATTAGGGCTCAGGATGATTTTGTGACTAAATTATCTGGCCATAAATCAGAGGTTTGTGGATTGAAATGGTCATATGATAATCGTGAATTGGCATCAGGAGGAAATGACAATAGATTATTTGTTTGGAATCAACATTCAACCCAACCTGTACTTAAATTTTATGAGCACACAGCTGCTGTTAAAGCTATAGCATGGTCTCCTCATCTTCATGGACTACTCGCATCAGGGGGTGGAACTGCCGATCGATGTATTCGTTTTTGGAACACAACTACCAATACACACTTGAGCTGCATGGACACTGGAAGTCAGGTGTGCAATCTGGCATGGTCTAAGAATGTTAATGAACTTGTTAGTACTCATGGGTTCTCCCAAAACCAAATAATAGTCTGGAGATATCCAACCATGTCCAAGTTGGCGACATTGACTGGCCATACTTTCAGAGTTCTTTATCTGGCCATATCTCCTGATGGACAGACCATTGTAACAGGCGCTGGTGATGAAACTCTAAGATTTTGGAATGTCTTCCCTTCACCTAAATCACAGAACACGGACAGTGAAATCGGGGCATCCTTCCTGGGACGAACCACCATCCGTTAA 1512 44.31 MEDQALPQRTHLSSSTSSPSSSSSSSSSSSIQLNLPSSMSRASHSLETLTPSRQIDRMININHHLSPSRAIYSDRFIPSRSGSNFALFDISPVSNSHSDGREDTSTAYATLLRTALFGPDSGVIPPATPEKRSSPMCLPNHNIFRYKTETRRSMHSLSPFGFDAAAPGLNPSPVKTPRKVPRSPYKVLDAPALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWAQRGTHLAVGTSNGKVQIWDASRCKRVRTMEGHRLRIGALAWSSSLLSSGSRDKSILQRDIRAQDDFVTKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKFYEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLAWSKNVNELVSTHGFSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQNTDSEIGASFLGRTTIR* 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2158867 2162801 - CsaV3_5G003380.1 Csa05g00338 528725

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00338 503 SUPERFAMILY WD40 repeat-like 191 479 IPR036322 GO:0005515
Csa05g00338 503 SMART WD40_4 268 305 IPR001680 GO:0005515
Csa05g00338 503 SMART WD40_4 309 348 IPR001680 GO:0005515
Csa05g00338 503 SMART WD40_4 225 265 IPR001680 GO:0005515
Csa05g00338 503 SMART WD40_4 439 478 IPR001680 GO:0005515
Csa05g00338 503 SMART WD40_4 181 222 IPR001680 GO:0005515
Csa05g00338 503 SMART WD40_4 395 436 IPR001680 GO:0005515
Csa05g00338 503 SMART WD40_4 351 393 IPR001680 GO:0005515
Csa05g00338 503 ProSiteProfiles Trp-Asp (WD) repeats profile. 446 479 IPR001680 GO:0005515
Csa05g00338 503 ProSiteProfiles Trp-Asp (WD) repeats profile. 233 274 IPR001680 GO:0005515
Csa05g00338 503 Pfam WD domain, G-beta repeat 313 348 IPR001680 GO:0005515
Csa05g00338 503 Pfam WD domain, G-beta repeat 353 393 IPR001680 GO:0005515
Csa05g00338 503 Pfam WD domain, G-beta repeat 442 478 IPR001680 GO:0005515
Csa05g00338 503 Gene3D - 174 483 IPR015943 GO:0005515
Csa05g00338 503 ProSiteProfiles Trp-Asp (WD) repeats profile. 316 357 IPR001680 GO:0005515
Csa05g00338 503 MobiDBLite consensus disorder prediction 7 46 - -
Csa05g00338 503 Pfam Anaphase-promoting complex subunit 4 WD40 domain 235 289 IPR024977 -
Csa05g00338 503 PANTHER PROTEIN FIZZY-RELATED 1 28 503 - -
Csa05g00338 503 MobiDBLite consensus disorder prediction 1 46 - -
Csa05g00338 503 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 316 348 - -
Csa05g00338 503 ProSitePatterns Trp-Asp (WD) repeats signature. 465 479 IPR019775 -
Csa05g00338 503 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 28 503 IPR033010 GO:0010997|GO:0097027|GO:1904668
Csa05g00338 503 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 446 479 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00338 K03364 CDH1, FZR1; cell division cycle 20-like protein 1, cofactor of APC complex - csv:101220762 993.801
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00122 Csa-Chr5:617527 Csa05g00338 Csa-Chr5:2158867 1.33E-111 dispersed
Csa05g00338 Csa-Chr5:2158867 Csa05g01858 Csa-Chr5:21854616 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g425 . . . . . . . Bma14g00575 . . Cma02g01496 Cma15g01185 Car02g01258 Car15g01073 . . Cpe05g00294 . . . . . . . . . . . . . . . . Cone6ag0735 Cone9ag0739 . Csa05g00338 Chy09g01171 . Blo03g00379 . Bda07g00507 . . Bpe11g00694 . . . Cmo02g01537 Cmo15g01249 . . . . . Cpe13g00188 Bhi12g00333 . . Lac11g2159 Hepe06g1599 . Lcy12g1717 Cla01g00318 Cam01g0328 Cec01g0320 Cco01g0337 Clacu01g0330 Cmu01g0314 Cre09g2197 Lsi09g00323 . . Cme09g01704
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006983 1 1 1 1 1 1 4 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00338 Csa_Chr05 FPKM 9.843487 10.627631 43.785458 41.919502 40.766953 40.782612 34.443748 28.463318 28.25827 27.999168