Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00340 ATGGCTTCTTCTTCTTCTTTAAGCTTCAATCTCTTCATGGTGGCATTGGTTTTGGCCATCTTCATGAGATCAACCCTCGCTGTGTTCCAACCGAGCCCATGGAAACTTGCTCATGCCACCTTTTATGGCGACGAAACTGCCTCCGAGACTATGGGTGGAGCTTGTGGGTATGGAAACTTGTTTACGAACGGGTATGGGACTGATACTGTGGCTTTAAGCTCGACGCTATTCAACAACGGCTACGCTTGCGGGACTTGCTTTCAAATCAAATGCGTGCAGTCGAAGGCGTGCTACGCAAATGTGCCATTCACCACCGTGACAGCGACTAACCTGTGCCCGCCAAACTGGTCGCAGGACTCCAACGCTGGTGGGTGGTGCAACCCACCAAGAGTTCACTTCGACATGGCTAAGCCTGCCTTCATGAAGATCGCTTGGTGGAAGGCTGGAATTGTCCCTGTTCAGTACCGCAGGGTTCCATGTGCGAAAAAAGGAGGAATTCGTTTCAGCTTGCAAGGAAATGGATATTGGTTATTGGTTTATGTGATGAATGTAGGAGGAGGAGGAGATGTATATTCAATGGCAGTGAAAGGAAGCAAAACAGGATGGATAACGATGAGCCATAACTGGGGAGCTTCATATCAAGCTTTTTCTTCATTGGGTGGCCAATCACTTTCATTCAGAATCACTTCTTACACAACTAGAGAAACACTTACTCTATGGAATGTTCTTCCTTCAAATTGGCAAGTTGGGTTGACTTACAATTCTAAGTTCAACTTCCGTTGA 783 46.87 MASSSSLSFNLFMVALVLAIFMRSTLAVFQPSPWKLAHATFYGDETASETMGGACGYGNLFTNGYGTDTVALSSTLFNNGYACGTCFQIKCVQSKACYANVPFTTVTATNLCPPNWSQDSNAGGWCNPPRVHFDMAKPAFMKIAWWKAGIVPVQYRRVPCAKKGGIRFSLQGNGYWLLVYVMNVGGGGDVYSMAVKGSKTGWITMSHNWGASYQAFSSLGGQSLSFRITSYTTRETLTLWNVLPSNWQVGLTYNSKFNFR* 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2174486 2176590 - CsaV3_5G003400.1 Csa05g00340 528727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00340 260 PANTHER EXPANSIN-A15 4 260 IPR002963 GO:0009664
Csa05g00340 260 Pfam Expansin C-terminal domain 166 244 IPR007117 -
Csa05g00340 260 Gene3D - 20 161 IPR036908 -
Csa05g00340 260 SUPERFAMILY Barwin-like endoglucanases 33 183 IPR036908 -
Csa05g00340 260 SMART dpbb_1 69 155 IPR007112 -
Csa05g00340 260 PANTHER EXPANSIN-A7 4 260 - -
Csa05g00340 260 SUPERFAMILY PHL pollen allergen 162 255 IPR036749 -
Csa05g00340 260 Pfam Lytic transglycolase 69 155 IPR009009 -
Csa05g00340 260 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 175 255 IPR007117 -
Csa05g00340 260 Gene3D - 165 260 IPR036749 -
Csa05g00340 260 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 52 165 IPR007112 -
Csa05g00340 260 PRINTS Expansin signature 64 78 IPR002963 GO:0009664
Csa05g00340 260 PRINTS Expansin signature 104 114 IPR002963 GO:0009664
Csa05g00340 260 PRINTS Expansin signature 123 140 IPR002963 GO:0009664
Csa05g00340 260 PRINTS Expansin signature 140 153 IPR002963 GO:0009664
Csa05g00340 260 PRINTS Expansin signature 164 176 IPR002963 GO:0009664
Csa05g00340 260 PRINTS Expansin signature 176 197 IPR002963 GO:0009664
Csa05g00340 260 PRINTS Expansin signature 241 257 IPR002963 GO:0009664
Csa05g00340 260 PRINTS Expansin/Lol pI family signature 33 48 IPR007118 GO:0005576
Csa05g00340 260 PRINTS Expansin/Lol pI family signature 51 69 IPR007118 GO:0005576
Csa05g00340 260 PRINTS Expansin/Lol pI family signature 73 91 IPR007118 GO:0005576
Csa05g00340 260 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576
Csa05g00340 260 PRINTS Expansin/Lol pI family signature 202 216 IPR007118 GO:0005576
Csa05g00340 260 PRINTS Expansin/Lol pI family signature 241 255 IPR007118 GO:0005576
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g00346 Csa05g00340 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00340 Csa-Chr5:2174486 Csa04g01497 Csa-Chr4:14702397 7.67E-95 dispersed
Csa03g00346 Csa-Chr3:2855660 Csa05g00340 Csa-Chr5:2174486 1.05E-152 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00340 - - csv:101221231 551.592