Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00344 ATGGTTCTTCTGCCTTCTCTTTTTCTCCTTCTCTTACTCAACTTCCATGTCTATGAGGCTCAAGTAACCGAGCTTCCATTCAGTAATCTTCATACTTACATTGTCCATGTGAAGAAACCGGAGGTTGTTGATGATCTTGAAAGTTGGCATAGATCATTTTTACCAACGAGTTTGGAGAACTCAGAGGAGCAACCGACTTTGCTATATTCATACCGAAATGTCATGAGTGGTTTTAGTGCAAGACTTACTGAAGAACACGTGAAAGCGATGGAAGAGAAGGATGGTTTTGTGTCAGCTAGACGTGAAACGATAGTGCATTTGCACACAACTCACAGCCCTAATTTTCTAGGATTGAACCGTCAATTTGGGTTTTGGAAAGATTCGAACTTTGGAAAGGGAGTGATCATAGGAGTGTTAGATGGTGGAATCACACCAAGCCATCCTTCCTTTGTTGATGCGGGAATGCCGCAACCGCCAGCCAAATGGAAAGGAAGATGTGAGTTTAATTTCTCTGCTTGTAACAACAAGCTTATAGGTGCAAGATCTTTGAATCTCGCATCACAAGCCTTAAAGGGAAAGATAACAACATTGGATGACTCTCCAATTGATGAAGATGGCCACGGAACTCACACGGCAAGCACTGCAGCCGGTACTTTTGTCGACGGTGCTGAGGCACTAGGGAATGCTTTCGGTACTGCTGTTGGGATGGCACCGTTAGCTCACCTTGCCATTTACAAAGTTTGCTTTGGAGAAAGTTGCTCTAATGTTGACATTCTCGCAGGACTTGACGCGGCGGTTGAAGATGGTGTTGATGTGCTCTCTATATCACTCGGGGGCCCACCAGTACCATTCTTCGCAGACATTACGGCCATAGGTGCATTTGCAGCGATTCAAAAGGGGATTTTTGTAAGTTGCTCAGCTGCTAATTCAGGTCCTTTTAATGCCACATTGTCCAACGAAGCTCCATGGATTTTAACAGTTGCAGCTAGCACAATTGATAGAAAAATCACAGCGACTGCAAAGCTTGGAAATGGAGAAGAATTCGATGGCGAATCTCTGTTCCAGCCAAATGATTTTCCTCAAACATTCTTACCACTTGTTTTCCCTGGTGAGAAGAATGAAACGGTAGCATTATGTGCTGAAGGATCATTGAAAAACATTGATGTAAAAGGAAAAGTTGTAGTATGCGACAGAGGAGGAGGAATTGCGAGAATTGCAAAAGGGGTTGAAGTGAAAAATGCTGGTGGCGCCGCCATGATCCTTCTCAACGCAGAATCAGATGGCTTCACTACTGAAGCAGATGCTCATGTTCTTCCGGCAAGCCATGTCAGCCATACAGCGGCACTGAAAATCAAAGCCTACATAAACTCAACAACATACCCAACAGCCACAATCGTATTCAAAGGAACCACAATTGGTGATGACTTCTCTCCAGCCATAGCTGCTTTCTCATCTCGAGGTCCCAGCCTCGCAAGCCCCGGCATCTTGAAACCAGACATAACTGGTCCCGGTGTCAGCATTTTAGCAGCATGGCCATTCCCATTAGACAACAACACAAACACAAAATCAACATTCAACATAGTTTCAGGAACATCCATGTCTTGTCCTCATCTCAGTGGCATTGCAGCTCTGATCAAAAGTGCTCATCCTGATTGGTCACCGGCTGCCATTAAATCCTCTATAATGACAACTGCTAACATAACAAATCTGGAAGGCAACCCAATTGTTGATCAAACTTTGCAGCCTGCGGATTTGTTCGCTATTGGAGCAGGTCATGTAAACCCATCAAAAGCAGTAGACCCAGGATTGGTTTATGACATTCAACCTGATGATTATATTCCTTATCTTTGTGGATTAGGATACACCAATAACCAAGTTTCACTTATTGCTCATAAACCAATTGATTGTTTAACAACAACAAGCATCCCAGAAGGAGAACTCAACTACCCATCATTTATGGTCAAATTAGGACAGGTGCAAACATTCTCGAGAACGGTTACTTATGTTGGCAGTGGACGTGAAGTTTATAACGTCGTCATTGAAGCACCGGAAGGGGTTTCTGTAACAGTCCGACCAAGGAAGGTAATTTTCTCGGCATTGAACCAAAAAGCAACATATTCAGTGACGTTTAAGAGAATTGGTTCAATCAGTCCCTCGACTGAGTTTGCTGAAGGATATCTAAAATGGGTTTCTGCTAAACACTTGGTTAGAAGTCCGATATCTGTTAAGTTTGTATGA 2238 43.43 MVLLPSLFLLLLLNFHVYEAQVTELPFSNLHTYIVHVKKPEVVDDLESWHRSFLPTSLENSEEQPTLLYSYRNVMSGFSARLTEEHVKAMEEKDGFVSARRETIVHLHTTHSPNFLGLNRQFGFWKDSNFGKGVIIGVLDGGITPSHPSFVDAGMPQPPAKWKGRCEFNFSACNNKLIGARSLNLASQALKGKITTLDDSPIDEDGHGTHTASTAAGTFVDGAEALGNAFGTAVGMAPLAHLAIYKVCFGESCSNVDILAGLDAAVEDGVDVLSISLGGPPVPFFADITAIGAFAAIQKGIFVSCSAANSGPFNATLSNEAPWILTVAASTIDRKITATAKLGNGEEFDGESLFQPNDFPQTFLPLVFPGEKNETVALCAEGSLKNIDVKGKVVVCDRGGGIARIAKGVEVKNAGGAAMILLNAESDGFTTEADAHVLPASHVSHTAALKIKAYINSTTYPTATIVFKGTTIGDDFSPAIAAFSSRGPSLASPGILKPDITGPGVSILAAWPFPLDNNTNTKSTFNIVSGTSMSCPHLSGIAALIKSAHPDWSPAAIKSSIMTTANITNLEGNPIVDQTLQPADLFAIGAGHVNPSKAVDPGLVYDIQPDDYIPYLCGLGYTNNQVSLIAHKPIDCLTTTSIPEGELNYPSFMVKLGQVQTFSRTVTYVGSGREVYNVVIEAPEGVSVTVRPRKVIFSALNQKATYSVTFKRIGSISPSTEFAEGYLKWVSAKHLVRSPISVKFV* 746
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2210324 2212561 - CsaV3_5G003440.1 Csa05g00344 528731

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00344 745 SUPERFAMILY Subtilisin-like 107 603 IPR036852 GO:0004252|GO:0006508
Csa05g00344 745 Pfam Peptidase inhibitor I9 32 108 IPR010259 -
Csa05g00344 745 PRINTS Subtilisin serine protease family (S8) signature 131 150 IPR015500 -
Csa05g00344 745 PRINTS Subtilisin serine protease family (S8) signature 203 216 IPR015500 -
Csa05g00344 745 PRINTS Subtilisin serine protease family (S8) signature 529 545 IPR015500 -
Csa05g00344 745 Gene3D - 333 473 - -
Csa05g00344 745 Gene3D - 616 744 - -
Csa05g00344 745 CDD Peptidases_S8_3 105 566 IPR034197 -
Csa05g00344 745 ProSiteProfiles Serine proteases, subtilase domain profile. 115 599 - -
Csa05g00344 745 PANTHER SUBTILISIN-LIKE PROTEASE SBT1.7 27 742 - -
Csa05g00344 745 Pfam Subtilase family 131 574 IPR000209 GO:0006508|GO:0008236
Csa05g00344 745 Pfam Fibronectin type-III domain 646 742 IPR041469 -
Csa05g00344 745 SUPERFAMILY PA domain 351 482 IPR046450 -
Csa05g00344 745 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 20 108 IPR037045 -
Csa05g00344 745 Gene3D Peptidase S8/S53 domain 133 612 IPR036852 GO:0004252|GO:0006508
Csa05g00344 745 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 27 742 IPR045051 -
Csa05g00344 745 CDD PA_subtilisin_like 339 465 - -
Csa05g00344 745 Pfam PA domain 379 450 IPR003137 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00344 - - - cpep:111786140 1149.42
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00344 Csa-Chr5:2210324 Csa05g01053 Csa-Chr5:10486590 0 dispersed
Csa05g00344 Csa-Chr5:2210324 Csa05g00348 Csa-Chr5:2230560 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g434 . . . . . . . . . Cmo16g01045 Cma02g01498 . Car02g01261 . . . Cpe05g00291 . . . . . . . . . . . . . . Cone8ag0344 . . . . Csa05g00344 Chy09g01163 . . . Bda07g00509 . . . . . . Cmo02g01539 . . . . . . . Bhi12g00343 . . . Hepe06g1605 . Lcy12g1726 . . . . . . . Lsi09g00337 . . Cme09g01695
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002315 3 2 1 2 2 2 1 1 3 3 2 2 1 2 2 1 2 3 1 1 2 8 1 0 2 5 1 1 2 3 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00344 Csa_Chr05 FPKM 15.082177 15.375583 15.2872 16.196959 20.788509 19.728386 22.43815 13.699646 14.765995 12.804806