Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00348 ATGGTTTTTCTTCCTTTCATTTGTATCTTTTTCTTCCTCAATTTTCATGGCTATGTTGCCATGAAAACTGAGCTTTGGAGTGCTTCCAACACCAATTTACAAACCTACATTGTTCATGTTAAGCAACCAGAGGTTGAGATTTTGGGTGACACCATTGATCTACAAAATTGGTACACATCATTCTTACCAGAAACGATCGAAGCGTCATCCAACGAACAATCACGGTTACTTTATTCATATCGACACGTGATCAGTGGTTTCTCTGCAAGACTTACAAAAGAACAAGTTAAAACAATGGAAGAGAAGGATGGTTTCATCTCAGCCATGCCTGAAACCACATTGAATTTGCACACAACTCACACACCTGAATATTTGGGGTTGAACCAACATTTTGGGTTATGGAAAAATTCAAACTTTGGTAAAGGAGTGATCATAGGAGTATTGGATACTGGAATTCATCCAAATCATCCTTCGTTTAACGATGAAGGAATGCCGTCACCACCGGCGAAATGGAAAGGGAGATGCGAATTTGGTGCTTCTATTTGTAACAACAAGTTGATTGGTGCAAGAACTTTCAATCTTGCTAATAATGTTTCGATTGGGAAATCACCAAATGACGAAAATGGACATGGCACACACACAGCAAGCACAGCTGCAGGCACTTTTGTTAAAGGTGCTGAAGCTTTGGGAAATGCAAGAGGCAAAGCAGTTGGAATGGCACCTTTAGCTCATATTGCAGTGTACAAAGTTTGTTCTCCAAAAGGTTGTTCCAGTAGTGATATACTTGCTGCCTTAGATGCTGCAATCGACGACGGTGTTGACGTGCTCTCGCTCTCCCTCGGTGCCCCTTCGACTCCATTTTTCAAAGACACAATTGCCGTAGGGGCATTTGCAGCCATTAAAAAGGGAATTTTTGTGAGTTGTTCAGCAGGGAATTCAGGCCCTTCCAAAAATACATTAGCCAACGAAGCACCATGGATTTTAACTGTTGGAGCTAGCACCATTGATAGAAAAATCGTGGCATTGGCAAAGCTTGAAAGTGGCAAAGTCTTTACCGGTGAATCTCTGTTCCAGCCAAGAGATTTCTCATCAAAATTCTTACCACTTGTATACGCTGGCAAAAGCGGAATCGAAGGTTCTGAATATTGTGTTGAAGGTTCACTTGAAAAGCTGAATGTGACAGGAAAAATCGTGGTATGTGAACGAGGAGGAGGAATAGGCAGAATAGCAAAAGGGTTGGTTGTGAAAAATGGTGGCGGCGCTGCCATGATTCTTGTAAACCAAAAACCAGATGGGTTTAGTACTTTAGCTGAAGCTCATGTTCTTCCAACAACCCATTTAAGCTATGAAGATGGACTTAAAATCAAAGAATATATAAATTCATCACATAATCCAAAAGCTTCAATTTCATTTGAAGGAACTCTGCTTGGAAACAGAGCCACCACTTTCTCCCCTGCTATGGCTTCTTTTTCTTCACGAGGGCCATGTCAAGCAAGCCCTGGGATCTTGAAACCTGACATAACAGGCCCTGGTGTCAACATTCTCGCAGCTTGGCCATTCCCATTAAACAACAACACAAACACGAACACAAAATCGACTTTTAATGTTATATCAGGAACATCAATGTCTTGTCCTCATTTAAGTGGAATTGCAGCTTTGATCAAGAGTAATCATCCTAATTGGTCCCCTGCTGCCATTAAATCTGCTATTATGACCTCTGCAGATGTAAGAAATCCTCAAGGGAAACCAATCGTGGATCAAGATTTGAAACCAGCGAACTTTTTCGCTATGGGGTCCGGACATGTTAATCCATCAAAAGCAGCTAACCCAGGATTGGTTTATGACATTCAGCCCGATGATTATGTTCCTTATCTTTGCCATTTGTACACAGATGCTCAAGTGTCGATTATTGTTCGTAGACAAGTAACGTGTTCGACGGTATCAAGAATACGAGAAGGCGATCTGAATTATCCTTCGTTTGCTGTGAGTTTGGGAGCTGATTCACAGGCGTTTAATAGAACAGTGACAAATGTGGGTGATGCTAATTCAGTTTATTACGCCATTGTTAAGGCACCAGCTGGAGTTTCAGTGAGAGTTACACCAAGAAATTTGAAGTTCTCAAAGTTGAATGAAAAATTGACATATTCTGTAACTTTCAGCCGGATCGACTTTGTTAGAACAAGAAGTGAATTCAGTGAAGGGTATCTCATATGGGTTTCTAATAAACACATAGTGAGAAGTCCAATCTCTGTAAAGCTCACCTAA 2265 41.02 MVFLPFICIFFFLNFHGYVAMKTELWSASNTNLQTYIVHVKQPEVEILGDTIDLQNWYTSFLPETIEASSNEQSRLLYSYRHVISGFSARLTKEQVKTMEEKDGFISAMPETTLNLHTTHTPEYLGLNQHFGLWKNSNFGKGVIIGVLDTGIHPNHPSFNDEGMPSPPAKWKGRCEFGASICNNKLIGARTFNLANNVSIGKSPNDENGHGTHTASTAAGTFVKGAEALGNARGKAVGMAPLAHIAVYKVCSPKGCSSSDILAALDAAIDDGVDVLSLSLGAPSTPFFKDTIAVGAFAAIKKGIFVSCSAGNSGPSKNTLANEAPWILTVGASTIDRKIVALAKLESGKVFTGESLFQPRDFSSKFLPLVYAGKSGIEGSEYCVEGSLEKLNVTGKIVVCERGGGIGRIAKGLVVKNGGGAAMILVNQKPDGFSTLAEAHVLPTTHLSYEDGLKIKEYINSSHNPKASISFEGTLLGNRATTFSPAMASFSSRGPCQASPGILKPDITGPGVNILAAWPFPLNNNTNTNTKSTFNVISGTSMSCPHLSGIAALIKSNHPNWSPAAIKSAIMTSADVRNPQGKPIVDQDLKPANFFAMGSGHVNPSKAANPGLVYDIQPDDYVPYLCHLYTDAQVSIIVRRQVTCSTVSRIREGDLNYPSFAVSLGADSQAFNRTVTNVGDANSVYYAIVKAPAGVSVRVTPRNLKFSKLNEKLTYSVTFSRIDFVRTRSEFSEGYLIWVSNKHIVRSPISVKLT* 755
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2230560 2232853 + CsaV3_5G003480.1 Csa05g00348 528735

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00348 754 Gene3D - 625 753 - -
Csa05g00348 754 CDD Peptidases_S8_3 122 575 IPR034197 -
Csa05g00348 754 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 145 156 IPR023827 -
Csa05g00348 754 ProSiteProfiles Serine proteases, subtilase domain profile. 124 608 - -
Csa05g00348 754 Pfam Fibronectin type-III domain 654 751 IPR041469 -
Csa05g00348 754 SUPERFAMILY Subtilisin-like 116 612 IPR036852 GO:0004252|GO:0006508
Csa05g00348 754 Pfam Peptidase inhibitor I9 35 117 IPR010259 -
Csa05g00348 754 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 30 751 IPR045051 -
Csa05g00348 754 PRINTS Subtilisin serine protease family (S8) signature 140 159 IPR015500 -
Csa05g00348 754 PRINTS Subtilisin serine protease family (S8) signature 206 219 IPR015500 -
Csa05g00348 754 PRINTS Subtilisin serine protease family (S8) signature 538 554 IPR015500 -
Csa05g00348 754 CDD PA_subtilisin_like 348 469 - -
Csa05g00348 754 Pfam Subtilase family 140 577 IPR000209 GO:0006508|GO:0008236
Csa05g00348 754 Pfam PA domain 368 455 IPR003137 -
Csa05g00348 754 Gene3D - 336 476 - -
Csa05g00348 754 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 19 117 IPR037045 -
Csa05g00348 754 PANTHER SUBTILISIN-LIKE PROTEASE SBT1.7 30 751 - -
Csa05g00348 754 Gene3D Peptidase S8/S53 domain 142 621 IPR036852 GO:0004252|GO:0006508
Csa05g00348 754 SUPERFAMILY PA domain 368 462 IPR046450 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00348 - - - csv:101217847 1488.4
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00348 Csa-Chr5:2230560 Csa05g01053 Csa-Chr5:10486590 0 dispersed
Csa05g00344 Csa-Chr5:2210324 Csa05g00348 Csa-Chr5:2230560 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g437 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00348 Chy09g01158 . . . . . . . . . . . . . . . . . . Bhi12g00346 . . . . . Lcy12g1729 . . . . . . . Lsi09g00345 . . Cme09g01692
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002315 3 2 1 2 2 2 1 1 3 3 2 2 1 2 2 1 2 3 1 1 2 8 1 0 2 5 1 1 2 3 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00348 Csa_Chr05 FPKM 4.248571 3.32966 3.153391 3.832097 36.48888 36.726139 39.649635 0.068008 0.0 0.085436