Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00351 ATGGAACTTTCAATTCTCAGTTGCATAGTATGTCTCATCGTCACTTCCATACTCATCCATTTCATATTAAATAGGAAAAAACCCAATCTTCCACCCGGACCCAGATCCCTTCCCATCATCGGAAATCTATTAGATATTGGGGACAGACCCCACAAATATCTCGCCGACCTTGCCAAAATCTACGGCCCGATCGCGTCGTTAAAGCTCGGCCAAGTCAATGCCATCGTCGTATCATCACCGGAGACAATACGACAAGTCCTTGAAACTCACGACCAGGTATTATCCACCAGAGCAATCCCGGACGGCGCAAGAGTATTCGACCACGACAAATTAGGTACGTTATGGGTCGCCCCTATTTCGCCAATTTGGAAAAACGTTAGAAAACTGTTCAAAACCCGACTTTTTTCCCAAAAAAGTCTGGAGGTCAGTGAAAGTATCCGGCAAGCGAAGATTAAAGAGCTTTTGAATAGCGTCCGGGAAAGCGCCGTAAAGGGCGAGGTTGTAGATGTTGGAGCGGCGGCGTTTAGGACGGCTCTTAATATAATGTCCTGTTCGATTTGGTCAATGGATTTGGCAGATACTAATTCGGAAATGGTGAAACAATTTCAGTCAAGGTTTAGGGGAGTGATGGAAGCATTTGGGAGAACGAATGTTAGTGATTTTTTCCCGGTGGTTAAGAAATTTGATATTCAAGGAGTGAGGAGGCGTAACAGCGTTCATTTGAGAAAGATCTTTGATTTGATCGATGAGATGATTGACGGACGGCTGAAAATGCAGGAATCTCTTGGTTTTACACCCAAAATTGATGCGTTGTATCATCTTCTAAATTTGGATGAGGAGAAGAACGGAGAGATTCTTATGGACAGAAACCAAATTGGACATTTGATTTTGGATCTATTTGTAGCAGGCACCGATACAACTGCAACAATAATTCAATGGGCAATGGCATATCTTTTACAAAACCCAAAAGTTATGTCAAAAGCCAAAGATGAGCTAAACCAAATGATAGGAAAAGGAAATGCAATTATTGAAGAATCACAAATTGAGAAGCTTCCATATTTACAAGCAATCATCAAAGAAACATTGCGATTGCAATCTTCACTTCTTCTTCCTCGTAAAGCCCAATCGCAAGTCACCATTTCTGGCTACACAGTCCCGAAAGGTACCCAAATAATTGTCAATCTTTGGGCCTTAGGTAGAGACTCCAATATTTGGGAACAACCAAATTGTTTCATACCAGAAAGGTTTTTTGGTAATTTCAATACCAAAGGTAGAAATTTTGAGTACATTCCATTCGGTAGTGGGAGGAGAATTTGCCCTGGACAACCCTTAGGAATGAGGATAGTGCATTTGATTGTGGGTTCTTTGGTTCATTGGTTTGATTGGAAGCTTGAAGATGGAGTTACACCACAGAGTTTGAATATGGATGACAAATTTGGATTGACTTTGGAGATGGCTCAACCTTTGAGAGCTATTCCTCTCTCTTAA 1488 41.53 MELSILSCIVCLIVTSILIHFILNRKKPNLPPGPRSLPIIGNLLDIGDRPHKYLADLAKIYGPIASLKLGQVNAIVVSSPETIRQVLETHDQVLSTRAIPDGARVFDHDKLGTLWVAPISPIWKNVRKLFKTRLFSQKSLEVSESIRQAKIKELLNSVRESAVKGEVVDVGAAAFRTALNIMSCSIWSMDLADTNSEMVKQFQSRFRGVMEAFGRTNVSDFFPVVKKFDIQGVRRRNSVHLRKIFDLIDEMIDGRLKMQESLGFTPKIDALYHLLNLDEEKNGEILMDRNQIGHLILDLFVAGTDTTATIIQWAMAYLLQNPKVMSKAKDELNQMIGKGNAIIEESQIEKLPYLQAIIKETLRLQSSLLLPRKAQSQVTISGYTVPKGTQIIVNLWALGRDSNIWEQPNCFIPERFFGNFNTKGRNFEYIPFGSGRRICPGQPLGMRIVHLIVGSLVHWFDWKLEDGVTPQSLNMDDKFGLTLEMAQPLRAIPLS* 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2242558 2246789 + CsaV3_5G003510.1 Csa05g00351 528738

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00351 495 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 432 441 IPR017972 GO:0005506|GO:0016705
Csa05g00351 495 PRINTS P450 superfamily signature 302 319 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00351 495 PRINTS P450 superfamily signature 356 367 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00351 495 PRINTS P450 superfamily signature 430 439 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00351 495 PRINTS P450 superfamily signature 439 450 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00351 495 Pfam Cytochrome P450 31 479 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00351 495 Gene3D Cytochrome P450 22 491 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00351 495 PANTHER CYTOCHROME P450 FAMILY MONOOXYGENASE 10 494 - -
Csa05g00351 495 SUPERFAMILY Cytochrome P450 22 491 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00351 495 PRINTS E-class P450 group I signature 58 77 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00351 495 PRINTS E-class P450 group I signature 291 308 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00351 495 PRINTS E-class P450 group I signature 311 337 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00351 495 PRINTS E-class P450 group I signature 355 373 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00351 495 PRINTS E-class P450 group I signature 394 418 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00351 495 PRINTS E-class P450 group I signature 429 439 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00351 495 PRINTS E-class P450 group I signature 439 462 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00351 495 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 10 494 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00351 - - - csv:101218322 983.015
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00351 Csa-Chr5:2242558 Csa05g00383 Csa-Chr5:2469249 7.98E-108 dispersed
Csa05g00349 Csa-Chr5:2234239 Csa05g00351 Csa-Chr5:2242558 6.54E-173 proximal
Csa05g00351 Csa-Chr5:2242558 Csa05g00352 Csa-Chr5:2246079 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g443 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00351 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000276 0 5 1 0 1 4 0 5 5 7 5 5 3 10 7 9 5 5 4 5 6 6 4 5 7 13 5 4 4 6 146
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00351 Csa_Chr05 FPKM 14.428339 13.75978 0.0 0.0 1.625622 0.828035 1.4798 1.097412 1.069273 1.304665