Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00358 ATGTGCGTCAGTGCAACACAGAGTGTTCTGTTTCATACAATTCAGAGTTCAAAGAACAGAAGAAGTTCAAAAAGATCAAATTTTCAAGTTCTGAGGCTTACAAGCAGGAGGAGATGTGAAGAGAAGCTGGGGAAGGATATTGAGCTGAAGAATCTGCAGCTATATCTGGAGAATCAAACCATAATTGAAGAGAATGAGAAACTAAGAGAGAAAGCCAATATCCTTCATCAAGAGAATTTGGCTTTATTGACTGAATTTCAGAAAAAATTCCCACATTTGGAACAGAGAAAGTGA 294 37.41 MCVSATQSVLFHTIQSSKNRRSSKRSNFQVLRLTSRRRCEEKLGKDIELKNLQLYLENQTIIEENEKLREKANILHQENLALLTEFQKKFPHLEQRK* 98
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2270280 2271244 - CsaV3_5G003580.1 Csa05g00358 528745

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00358 97 Coils Coil 58 85 - -
Csa05g00358 97 PANTHER OS09G0520500 PROTEIN 1 94 - -
Csa05g00358 97 PANTHER PROTEIN LITTLE ZIPPER 4 1 94 IPR039312 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00358 - - - cpep:111796094 151.754
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03409 Csa-Chr3:30758123 Csa05g00358 Csa-Chr5:2270280 6.96E-08 dispersed
Csa03g00956 Csa-Chr3:7807086 Csa05g00358 Csa-Chr5:2270280 1.08E-12 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g458 . . . . . . . . . . . Cma15g01178 . Car15g01066 . . . . . . . . . . . . . . . . . . . . . . Csa05g00358 Chy09g01149 . . . . . . . . . . . . . . . . . Cpe13g00196 . . . . . . . Cla01g00336 Cam01g0349 Cec01g0345 Cco01g0357 Clacu01g0353 Cmu01g0333 Cre09g2177 Lsi09g00362 . . Cme09g01681
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008967 0 0 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 0 1 1 1 2 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00358 Csa_Chr05 FPKM 7.801768 7.97156 4.476396 3.220019 2.224785 2.119301 1.195259 0.180324 0.534868 0.0