Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00359 ATGGGTTCAGAGCAAAACGATGGCACAAGCTACCAACCATCGGAGCCGAAGCTTTGCGTGAACAACTGCGGCTTCTTTGGTTCAGCCGGTACCGAGAATCTCTGCTCGAAGTGCTACAGAGACTCTCGAATCAAAGAAGAGCAAGCGGCATCCGCAAAAGCAGCGATGGAGAAATCCCTTCAGTCCAAAATTTTAAAGCCGGCTGAAGGTAATTCTCCAGTTGTCTTCTCCGATTCATCAGTGGATTCAGCTTCGTCGTCGTCATCCACTGGAAATTCCCTCGGCAGTTCCCACAAATCCCCATCACCGGATGTTCCAAACCGGTGCCGGAGCTGCAATAAGAAGGTGGGATTGATGGGGTTCAAATGCAAGTGCGATCTAACCTTCTGTGGAATTCACCGGTACCCAGAGAAACACAACTGTTGTTACGACTTCAAAAGTGCTGGACGGGAGGAGATCGCCATAGCCAATCCTGTGGTGAGGGCCGATAAAGTTGAAAGGTTCTGA 507 50.1 MGSEQNDGTSYQPSEPKLCVNNCGFFGSAGTENLCSKCYRDSRIKEEQAASAKAAMEKSLQSKILKPAEGNSPVVFSDSSVDSASSSSSTGNSLGSSHKSPSPDVPNRCRSCNKKVGLMGFKCKCDLTFCGIHRYPEKHNCCYDFKSAGREEIAIANPVVRADKVERF* 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2277983 2280127 + CsaV3_5G003590.1 Csa05g00359 528746

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00359 168 SMART AN1_Zf_4 109 146 IPR000058 GO:0008270
Csa05g00359 168 ProSiteProfiles Zinc finger A20-type profile. 13 47 IPR002653 GO:0003677|GO:0008270
Csa05g00359 168 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 1 1 168 - -
Csa05g00359 168 Gene3D - 82 164 IPR035896 -
Csa05g00359 168 SUPERFAMILY AN1-like Zinc finger 100 163 IPR035896 -
Csa05g00359 168 SMART A20_3 16 40 IPR002653 GO:0003677|GO:0008270
Csa05g00359 168 MobiDBLite consensus disorder prediction 64 106 - -
Csa05g00359 168 ProSiteProfiles Zinc finger AN1-type profile. 103 149 IPR000058 GO:0008270
Csa05g00359 168 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 168 - -
Csa05g00359 168 Pfam AN1-like Zinc finger 109 144 IPR000058 GO:0008270
Csa05g00359 168 Pfam A20-like zinc finger 18 40 IPR002653 GO:0003677|GO:0008270
Csa05g00359 168 Gene3D - 1 64 - -
Csa05g00359 168 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 18 61 - -
Csa05g00359 168 MobiDBLite consensus disorder prediction 73 106 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00359 - - - csv:101209054 315.849
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa03g01639 Csa05g00359 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00359 Csa-Chr5:2277983 Csa06g02676 Csa-Chr6:23523782 4.51E-48 dispersed
Csa03g01638 Csa-Chr3:12248109 Csa05g00359 Csa-Chr5:2277983 1.03E-22 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g460 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone9ag0728 . Csa05g00359 . . . . . . . . . . . . . . . . . . Cpe13g00197 Bhi12g00355 . . Lac11g2189 Hepe06g1619 . Lcy12g1743 Cla01g00337 Cam01g0350 Cec01g0346 Cco01g0358 Clacu01g0354 Cmu01g0334 Cre09g2176 Lsi09g00363 . . .
Vvi16g510 . . . . . . . . . . . Cma15g01177 . Car15g01065 . . . . . . . . . . Cla01g00337 Cam01g0350 Cec01g0346 Cco01g0358 Clacu01g0354 Cmu01g0334 Cre09g2176 . . . . Lsi05g01302 Csa05g00359 Chy09g01148 Cme06g00925 . . . . . . . . . . Cmo15g01238 . . . Car18g01105 Cpe09g00133 . Bhi12g00355 . . Lac11g2189 Hepe06g1619 . Lcy12g1743 Cla05g00813 Cam05g0896 . Cco05g0904 Clacu05g0887 Cmu05g0843 Cre05g0929 . Csa03g01639 . Cme09g01680
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005235 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 4 2 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00359 Csa_Chr05 FPKM 40.756512 44.591831 29.181791 26.260071 68.73732 71.24617 63.840981 10.56482 9.585348 9.007849
Csa05g00359 Csa_Chr11 FPKM 47.513622 55.507744 68.833916 63.739933 93.044952 107.409943 89.656143 104.801208 112.314598 112.280167