Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00360 ATGGCTGCTTCTGGGGGTACTAGTTATAGAAATGGTGCCACTTCTAGAAACTCCCTTAAGCTCGATAAGCCCTTTTCTGCTAATTCCTCCAACTCCAAGTCTTCTCTTAAGTCAAAGTCTCTTCCCAATTCTGCTCTTCGCCGCAGCAGCCCTGCTGCTCTTGGAGTTGCCAAGGATGATGGTGGAGTTCCTGGAAGAGTTCGAGTGGCTGTTAGATTGCGACCGCGCAATACAGAAGAATCAATAGCCGATGCTGATTTTGCTGATTGTGTAGAATTGCAGCCAGAGCTTAAAAGGTTGAAACTTCGGAAGAACAACTGGGATTCAGATACTTATGAGTTTGATGAAGTGCTAACTGAATTTGCATCTCAAAAACGTGTTTATGAAGTCGTGGCGAAACCTGTTGTGGAGAGTGTATTGGATGGGTACAACGGAACAATTATGGCATATGGTCAGACTGGTACTGGTAAAACATATACTCTTGGAAGACTAGGAGAGGAAGACACTGCTGATCGTGGAATCATGGTGCGTGCTATGGAGGACATCTTGGCTGAAGTTTCTTTGGAGACTGATTCCGTCTCAGTGTCCTACCTGCAGCTTTATATGGAGAGCATACAGGACCTTCTTGACCCTGCAAATGATAACATTTCCATTGTTGAAGATCCTAAAACTGGAGATGTTTCAGTACCTGGGGCTACCCTCGTAGAAATTAGACACCAGGAGAGCTTTTTGGAACTACTAAGATTGGGGGAAGCTCATCGGTTTGCTGCGAATACAAAACTGAACACTGAATCTTCCCGCAGTCATGCAATTCTGATGGTACACGTAAAACGGTCTCTAAAAGGAAGGGATTCAACTCTGTCAAGTGATAGTTCTCATTTAGTTAAGACCCTGAAACCTCCAATTGTTCGGAAGGGAAAATTAGTGGTGGTAGATCTTGCTGGTTCAGAGCGTATTGACAAGTCAGGAAGTGAAGGACATACACTTGAAGAAGCCAAATCCATCAATCTCTCCCTGAGTGCCTTAGGGAAGTGCATAAATGCACTTGCGGAGAATAGTGCACACGTTCCAGTTAGGGATTCAAAGCTGACAAGATTACTAAGGGATTCATTTGGGGGAACAGCAAGAACTTCATTGGTTATTACTATTGGTCCTTCACCTCGGCATCGTGGAGAGACCACGAGTACAATAATGTTTGGCCAACGGGCTATGAAGGTGGAAAATATGCTGAAGATAAAAGAAGAATTTGATTATAAAAGTTTGTCAAGAAGGTTAGACATTCAATTAGACAAACTGATTGCAGAACATGAAAGGCAGCAAAAGGCATTTGAGTTTGAAATTGAGAGAATTACCAAAGAAGCACAGGATCGCATATCTGAGGCTGAAAGAAGTCATTCAAATGCCCTAGAGAAGGAAAGGCTGAAATATCAGAAGGATTACATGGAATCAATCAAGAAGCTTGAAGATCAATTGATGGTGAAGCAGAGGAAGCTTGGTGGGGAGAAAGTAATTAATGAAGAAGTTGTTGCATCTGCTTCTAGTGTAATTGCTAATGGGGAGGGTTTGGCAGTGTCTGCTGACAAGGAAGTGGCAGAGCTAAAGAAGCTGGTTAAAAAGGAAATAGTTTTGAGGAAAGCAGCAGAAGAGGAAGTTAACAATCTTAGAAATCAAGTAGCCCAACTGAAGAGATCAGAGATCTCATGCAATTCAGAGATCTCAAAGCTCCGCAAAACTCTGGAAGATGAGCAACATCAGAAAAAAAAACTAGAAGGAGATATAGCTATGCTACAGAGCCAGTTGTTGCAATTGAGCTTTGAAGCAGATGAGACCAGTAGACGACTAGACAGAGGTGAGCCTGGTAAAGTCCTCGGTTCTCTCGATTCTCTCGTGCAACAAGTTAAGCACTCACAGGCACAGGATGCTGGAAACGGGGAGAAGGCTTCAGTGGCCAAACTATTTGAGCAAGTGGGACTGCAAAAGATCTTGTCGTTGCTGGAAGCTGAAGATTATGACGTCAGAATTCATGCTGTGAAAGTGGTTGCAAATCTAGCAGCTGAAGAAACAAATCAGCAAAAGATTGTTGAGGCTGGAGGCCTTACATCTTTGCTGATGCTACTCAGAAGCACTGAGGATGAGACAATTCACAGAGTTGCTGCAGGGGCGATTGCAAATCTAGCAATGAATGAGACCAACCAAGAGCTCATTATGTCCCAAGGAGGCATTAGCTTACTGTCCATGACCGCTGCCAACGCTGATGATCCCCAAACGCTTCGTATGGTTGCTGGAGCAATCGCCAATTTATGTGGCAATGATAAGTTGCAGATGAAGCTAAGGGGCGAAGGCGGTATTAGGGCATTGCTGGGTATGGTAAGATGCAGACATCCTGATGTTCTTGCACAAGTTGCTAGAGGAATTGCAAATTTCGCAAAGTGCGAGTCGAGGGCCTCTACACAAGGAACAGGGACCAAGGCTGGAAAGTCTTTCTTAATTGAAGATGGAGCACTCCCATGGATTGTACAGAATGCCAACAATGAAGCATCAACTATCAAACGACATATTGAACTTGCACTCTGTCATTTAGCACAGCATGAAGTGAACGCAAAAGACATGATCATTGGAGGTGCCCTATGGGAACTGGTTCGAATATCTCAAGACTGTTCACGGGAAGACATAAGAACTCTTGCACATCGAACATTAATATCAAGTCCAACATTTCAAGCTGAAATGAGACGATTACGGATAGATTATTGA 2751 43.66 MAASGGTSYRNGATSRNSLKLDKPFSANSSNSKSSLKSKSLPNSALRRSSPAALGVAKDDGGVPGRVRVAVRLRPRNTEESIADADFADCVELQPELKRLKLRKNNWDSDTYEFDEVLTEFASQKRVYEVVAKPVVESVLDGYNGTIMAYGQTGTGKTYTLGRLGEEDTADRGIMVRAMEDILAEVSLETDSVSVSYLQLYMESIQDLLDPANDNISIVEDPKTGDVSVPGATLVEIRHQESFLELLRLGEAHRFAANTKLNTESSRSHAILMVHVKRSLKGRDSTLSSDSSHLVKTLKPPIVRKGKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINALAENSAHVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGETTSTIMFGQRAMKVENMLKIKEEFDYKSLSRRLDIQLDKLIAEHERQQKAFEFEIERITKEAQDRISEAERSHSNALEKERLKYQKDYMESIKKLEDQLMVKQRKLGGEKVINEEVVASASSVIANGEGLAVSADKEVAELKKLVKKEIVLRKAAEEEVNNLRNQVAQLKRSEISCNSEISKLRKTLEDEQHQKKKLEGDIAMLQSQLLQLSFEADETSRRLDRGEPGKVLGSLDSLVQQVKHSQAQDAGNGEKASVAKLFEQVGLQKILSLLEAEDYDVRIHAVKVVANLAAEETNQQKIVEAGGLTSLLMLLRSTEDETIHRVAAGAIANLAMNETNQELIMSQGGISLLSMTAANADDPQTLRMVAGAIANLCGNDKLQMKLRGEGGIRALLGMVRCRHPDVLAQVARGIANFAKCESRASTQGTGTKAGKSFLIEDGALPWIVQNANNEASTIKRHIELALCHLAQHEVNAKDMIIGGALWELVRISQDCSREDIRTLAHRTLISSPTFQAEMRRLRIDY* 917
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2290459 2298095 + CsaV3_5G003600.1 Csa05g00360 528747

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00360 916 ProSiteProfiles Kinesin motor domain profile. 66 406 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa05g00360 916 PANTHER KINESIN-LIKE PROTEIN KIN-UA 48 908 IPR033291 GO:0008017|GO:0032886|GO:0048364
Csa05g00360 916 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 656 698 IPR000225 GO:0005515
Csa05g00360 916 Coils Coil 530 564 - -
Csa05g00360 916 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 697 740 IPR000225 GO:0005515
Csa05g00360 916 SUPERFAMILY ARM repeat 647 899 IPR016024 -
Csa05g00360 916 MobiDBLite consensus disorder prediction 1 47 - -
Csa05g00360 916 SMART arm_5 770 810 IPR000225 GO:0005515
Csa05g00360 916 SMART arm_5 728 769 IPR000225 GO:0005515
Csa05g00360 916 SMART arm_5 646 685 IPR000225 GO:0005515
Csa05g00360 916 SMART arm_5 686 727 IPR000225 GO:0005515
Csa05g00360 916 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 66 444 IPR027417 -
Csa05g00360 916 Gene3D - 447 901 IPR011989 -
Csa05g00360 916 PANTHER KINESIN-RELATED 48 908 IPR027640 GO:0003777|GO:0007018
Csa05g00360 916 Coils Coil 477 497 - -
Csa05g00360 916 Coils Coil 572 599 - -
Csa05g00360 916 CDD KISc 66 404 - -
Csa05g00360 916 Pfam Kinesin motor domain 72 406 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa05g00360 916 SMART kinesin_4 64 414 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa05g00360 916 Gene3D Kinesin motor domain 59 436 IPR036961 -
Csa05g00360 916 MobiDBLite consensus disorder prediction 1 59 - -
Csa05g00360 916 Coils Coil 433 471 - -
Csa05g00360 916 ProSitePatterns Kinesin motor domain signature. 306 317 IPR019821 GO:0003777|GO:0005524|GO:0007018
Csa05g00360 916 Pfam Armadillo/beta-catenin-like repeat 689 726 IPR000225 GO:0005515
Csa05g00360 916 PRINTS Kinesin heavy chain signature 142 163 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa05g00360 916 PRINTS Kinesin heavy chain signature 259 276 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa05g00360 916 PRINTS Kinesin heavy chain signature 307 325 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Csa05g00360 916 PRINTS Kinesin heavy chain signature 356 377 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00360 - - K10396 csv:101209471 1707.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00360 Csa-Chr5:2290459 Csa06g02284 Csa-Chr6:20468186 9.95E-98 dispersed
Csa01g03402 Csa-Chr1:30857012 Csa05g00360 Csa-Chr5:2290459 4.45E-60 transposed
Csa03g00958 Csa-Chr3:7815312 Csa05g00360 Csa-Chr5:2290459 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g462 . . Bda06g00057 . . . Bma07g01621 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00360 . . . . . Bda09g00070 . . . . . . . . . . . . Cpe13g00198 Bhi12g00357 . . . . . Lcy12g1744 Cla01g00338 Cam01g0351 Cec01g0347 Cco01g0359 Clacu01g0355 Cmu01g0335 Cre09g2175 Lsi09g00364 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001054 3 5 3 2 3 2 5 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 5 2 3 80
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00360 Csa_Chr05 FPKM 0.763713 1.509404 14.764586 16.812857 8.939476 9.54657 7.496243 4.20069 5.718513 4.86435