Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00361 ATGGATTCCCACTCCCTTCCCCCTCCTTTCCACACCCGTGATTTCCATCTCCAACAACATCCATTCCACACCAACACCAACAACAACAATTCCGAAGAAGAACATAGCACCACCACCACCCGTCTCAAACGCGACCGTGATGACGACACCAACAACTCCAACCCCAACTCCGCTGGCGACCCCACCCCCGACGGAGAAATCACTCGTCGCCCTAGAGGACGCCCTGCTGGATCCAAAAACAAACCTAAACCCCCCATTATCATTACTCGCGACAGCGCCAACGCTCTCCGTACTCACGTCATCGAAGTCACCGATGGCTGTGACATCGTCGATAGCGTCGCTACCTTCGCTAGACGTCGTCAACGTGGTGTTTGTATTATGAGTGGTACTGGTACGGTTACAAACGTTACTCTCCGTCAACCCGCTTCCCCCGGTGCAATTGTCAACTTACATGGCCGCTTCGAGATCTTATCTCTTGCCGGCTCGTTTCTTCCTCCTCCTGCTCCTCCAGCGGCTACTACTTTGACTATTTATCTCGCTGGTGGTCAAGGGCAAGTCGTCGGTGGTAGCGTTGTTGGTACTTTGATCGCTTCTGGTCCTGTCGTTATTATGGCTGCTTCCTTTAGTAACGCGGCGTATGAACGGCTTCCATTGGAGGAAGACGATCAACCACAGCTTCCGTCGCTGCAAGGCGGCGGGGGAATTGGATCACCGGATGAAGTTGGGCAGTCACAAATAACGGCGCAAACGGCACATCATCAACAACAGCAACAGAATCAACAACAACAGCAGCAACTACTTAACGATGGGAATGCGCCGTTATTTCACGGTTTGCCTCCGAATCTCTTGAATTCAATTCAAATGCCACCGTCGGAATCACCGTATTGGGCAACTGCCCGTCCTCCCTACTAA 912 52.41 MDSHSLPPPFHTRDFHLQQHPFHTNTNNNNSEEEHSTTTTRLKRDRDDDTNNSNPNSAGDPTPDGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVIEVTDGCDIVDSVATFARRRQRGVCIMSGTGTVTNVTLRQPASPGAIVNLHGRFEILSLAGSFLPPPAPPAATTLTIYLAGGQGQVVGGSVVGTLIASGPVVIMAASFSNAAYERLPLEEDDQPQLPSLQGGGGIGSPDEVGQSQITAQTAHHQQQQQNQQQQQQLLNDGNAPLFHGLPPNLLNSIQMPPSESPYWATARPPY* 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2300479 2302012 - CsaV3_5G003610.1 Csa05g00361 528748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00361 303 MobiDBLite consensus disorder prediction 240 270 - -
Csa05g00361 303 MobiDBLite consensus disorder prediction 19 35 - -
Csa05g00361 303 SUPERFAMILY AF0104/ALDC/Ptd012-like 93 225 - -
Csa05g00361 303 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 24-RELATED 3 303 - -
Csa05g00361 303 MobiDBLite consensus disorder prediction 1 88 - -
Csa05g00361 303 MobiDBLite consensus disorder prediction 36 51 - -
Csa05g00361 303 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 3 303 IPR014476 GO:0003680
Csa05g00361 303 ProSiteProfiles PPC domain profile profile. 93 232 IPR005175 -
Csa05g00361 303 CDD DUF296 97 163 IPR005175 -
Csa05g00361 303 Pfam Plants and Prokaryotes Conserved (PCC) domain 97 210 IPR005175 -
Csa05g00361 303 Gene3D - 96 228 - -
Csa05g00361 303 PIRSF ESCAROLA 10 303 IPR014476 GO:0003680
Csa05g00361 303 MobiDBLite consensus disorder prediction 222 303 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00361 Csa-Chr5:2300479 Csa06g00649 Csa-Chr6:5397986 1.02E-72 dispersed
Csa03g00960 Csa-Chr3:7828396 Csa05g00361 Csa-Chr5:2300479 1.07E-71 wgd
Csa05g00361 Csa-Chr5:2300479 Csa06g00611 Csa-Chr6:5164542 1.96E-87 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00361 - - csv:101209716 515.383