Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa05g00361 | ATGGATTCCCACTCCCTTCCCCCTCCTTTCCACACCCGTGATTTCCATCTCCAACAACATCCATTCCACACCAACACCAACAACAACAATTCCGAAGAAGAACATAGCACCACCACCACCCGTCTCAAACGCGACCGTGATGACGACACCAACAACTCCAACCCCAACTCCGCTGGCGACCCCACCCCCGACGGAGAAATCACTCGTCGCCCTAGAGGACGCCCTGCTGGATCCAAAAACAAACCTAAACCCCCCATTATCATTACTCGCGACAGCGCCAACGCTCTCCGTACTCACGTCATCGAAGTCACCGATGGCTGTGACATCGTCGATAGCGTCGCTACCTTCGCTAGACGTCGTCAACGTGGTGTTTGTATTATGAGTGGTACTGGTACGGTTACAAACGTTACTCTCCGTCAACCCGCTTCCCCCGGTGCAATTGTCAACTTACATGGCCGCTTCGAGATCTTATCTCTTGCCGGCTCGTTTCTTCCTCCTCCTGCTCCTCCAGCGGCTACTACTTTGACTATTTATCTCGCTGGTGGTCAAGGGCAAGTCGTCGGTGGTAGCGTTGTTGGTACTTTGATCGCTTCTGGTCCTGTCGTTATTATGGCTGCTTCCTTTAGTAACGCGGCGTATGAACGGCTTCCATTGGAGGAAGACGATCAACCACAGCTTCCGTCGCTGCAAGGCGGCGGGGGAATTGGATCACCGGATGAAGTTGGGCAGTCACAAATAACGGCGCAAACGGCACATCATCAACAACAGCAACAGAATCAACAACAACAGCAGCAACTACTTAACGATGGGAATGCGCCGTTATTTCACGGTTTGCCTCCGAATCTCTTGAATTCAATTCAAATGCCACCGTCGGAATCACCGTATTGGGCAACTGCCCGTCCTCCCTACTAA | 912 | 52.41 | MDSHSLPPPFHTRDFHLQQHPFHTNTNNNNSEEEHSTTTTRLKRDRDDDTNNSNPNSAGDPTPDGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVIEVTDGCDIVDSVATFARRRQRGVCIMSGTGTVTNVTLRQPASPGAIVNLHGRFEILSLAGSFLPPPAPPAATTLTIYLAGGQGQVVGGSVVGTLIASGPVVIMAASFSNAAYERLPLEEDDQPQLPSLQGGGGIGSPDEVGQSQITAQTAHHQQQQQNQQQQQQLLNDGNAPLFHGLPPNLLNSIQMPPSESPYWATARPPY* | 304 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 2300479 | 2302012 | - | CsaV3_5G003610.1 | Csa05g00361 | 528748 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa05g00361 | 303 | MobiDBLite | consensus disorder prediction | 240 | 270 | - | - | |
Csa05g00361 | 303 | MobiDBLite | consensus disorder prediction | 19 | 35 | - | - | |
Csa05g00361 | 303 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 93 | 225 | - | - | |
Csa05g00361 | 303 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 24-RELATED | 3 | 303 | - | - | |
Csa05g00361 | 303 | MobiDBLite | consensus disorder prediction | 1 | 88 | - | - | |
Csa05g00361 | 303 | MobiDBLite | consensus disorder prediction | 36 | 51 | - | - | |
Csa05g00361 | 303 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 3 | 303 | IPR014476 | GO:0003680 | |
Csa05g00361 | 303 | ProSiteProfiles | PPC domain profile profile. | 93 | 232 | IPR005175 | - | |
Csa05g00361 | 303 | CDD | DUF296 | 97 | 163 | IPR005175 | - | |
Csa05g00361 | 303 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 97 | 210 | IPR005175 | - | |
Csa05g00361 | 303 | Gene3D | - | 96 | 228 | - | - | |
Csa05g00361 | 303 | PIRSF | ESCAROLA | 10 | 303 | IPR014476 | GO:0003680 | |
Csa05g00361 | 303 | MobiDBLite | consensus disorder prediction | 222 | 303 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa05g00361 | Csa-Chr5:2300479 | Csa06g00649 | Csa-Chr6:5397986 | 1.02E-72 | dispersed | |
Csa03g00960 | Csa-Chr3:7828396 | Csa05g00361 | Csa-Chr5:2300479 | 1.07E-71 | wgd | |
Csa05g00361 | Csa-Chr5:2300479 | Csa06g00611 | Csa-Chr6:5164542 | 1.96E-87 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa05g00361 | - | - | csv:101209716 | 515.383 |