Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00365 ATGGAGGGAAGGGATGGTGGTGGTGCAAGTAGTGGAGTTACTGTGGTGGGATCAGATGCTCCGTCGGAGTACAAAATAGCTCCAAGGACTTCCGATAACCCACCGCAGACTGGTGGATCAACGACGCCGCCGGGGACTCAATCAACTTCGACGCCGTCGGCTTCAGCTCAGGTATCGGGACAGCCTCCGCCGCCAACGGCGGCCTCATCAGTACCGGGAAAGAAGAAAAGAGGGAGGCCCAGAAAATATGGACCCGATGGCTCTGTTTCTATGGCTCTGTCTCCCAAGCCGATATCGTTATCAGTGCCGCCGCCGGTCATCGACTTCTCAACGGAGAAGAAGGGGAAAGTACGGCCGGCGAGCGCTGTGAGTAAAAGCAAGTTCGAAGTAGATAATTTAGGTGACTGGGTTCCGTGTTCTCTTGGTGCAAATTTTACGCCTCATATCATCACTGTCAATGCGGGCGAGGATGTCACAATGAAGATAATATCCTTTTCTCAACAAGGGCCTCGAGCTATATGCATTTTATCTGCAAACGGTGTAATCTCAAGTGTCACTCTCCGCCAGCCTGACTCCTCTGGAGGAACACTAACTTATGAGGGACGATTTGAAATACTTTCCCTGTCCGGCTCATTCATGCCTAGTGACAATGGAGCAACAAGAAGTAGATCTGGTGGAATGAGTGTTTCCTTAGCAAGTCCAGATGGGCGTGTAGTAGGCGGTGGAGTAGCTGGTCTATTAGTAGCTGCTAGTCCTGTTCAGGTTGTAGTAGGGAGTTTTCTATCAGGAAATCAACATGAACAGAAACCGAAAAAGCCAAAACATGATACTATCTCACCGGCCCCGCCAACTGCTGCCATTCCAATATCTTGTGTCGATCCTAAGTCCAACCTGTCACCTTCCAGTTCCTTTCGAGGCGATAACTGGTCGATGCTGCCAACTGATTCGAGAAATAAGTCAACTGATATCAATGTATCACTACCCAGTGCTTGA 993 49.85 MEGRDGGGASSGVTVVGSDAPSEYKIAPRTSDNPPQTGGSTTPPGTQSTSTPSASAQVSGQPPPPTAASSVPGKKKRGRPRKYGPDGSVSMALSPKPISLSVPPPVIDFSTEKKGKVRPASAVSKSKFEVDNLGDWVPCSLGANFTPHIITVNAGEDVTMKIISFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSDNGATRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLSGNQHEQKPKKPKHDTISPAPPTAAIPISCVDPKSNLSPSSSFRGDNWSMLPTDSRNKSTDINVSLPSA* 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2347041 2351649 + CsaV3_5G003650.1 Csa05g00365 528752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00365 330 MobiDBLite consensus disorder prediction 1 104 - -
Csa05g00365 330 Pfam Plants and Prokaryotes Conserved (PCC) domain 147 260 IPR005175 -
Csa05g00365 330 MobiDBLite consensus disorder prediction 264 330 - -
Csa05g00365 330 MobiDBLite consensus disorder prediction 294 330 - -
Csa05g00365 330 CDD DUF296 146 237 IPR005175 -
Csa05g00365 330 MobiDBLite consensus disorder prediction 29 64 - -
Csa05g00365 330 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 10 328 - -
Csa05g00365 330 ProSiteProfiles PPC domain profile profile. 142 281 IPR005175 -
Csa05g00365 330 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 10 328 IPR039605 GO:0003680
Csa05g00365 330 Gene3D - 147 276 - -
Csa05g00365 330 SUPERFAMILY AF0104/ALDC/Ptd012-like 144 265 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00365 Csa-Chr5:2347041 Csa05g01080 Csa-Chr5:10953266 1.49E-121 dispersed
Csa05g01081 Csa-Chr5:10963654 Csa05g00365 Csa-Chr5:2347041 1.12E-27 dispersed
Csa03g00966 Csa-Chr3:7872369 Csa05g00365 Csa-Chr5:2347041 5.64E-103 wgd
Csa03g01634 Csa-Chr3:12213375 Csa05g00365 Csa-Chr5:2347041 5.60E-84 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00365 - - csv:101210208 577.785