Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa05g00365 | ATGGAGGGAAGGGATGGTGGTGGTGCAAGTAGTGGAGTTACTGTGGTGGGATCAGATGCTCCGTCGGAGTACAAAATAGCTCCAAGGACTTCCGATAACCCACCGCAGACTGGTGGATCAACGACGCCGCCGGGGACTCAATCAACTTCGACGCCGTCGGCTTCAGCTCAGGTATCGGGACAGCCTCCGCCGCCAACGGCGGCCTCATCAGTACCGGGAAAGAAGAAAAGAGGGAGGCCCAGAAAATATGGACCCGATGGCTCTGTTTCTATGGCTCTGTCTCCCAAGCCGATATCGTTATCAGTGCCGCCGCCGGTCATCGACTTCTCAACGGAGAAGAAGGGGAAAGTACGGCCGGCGAGCGCTGTGAGTAAAAGCAAGTTCGAAGTAGATAATTTAGGTGACTGGGTTCCGTGTTCTCTTGGTGCAAATTTTACGCCTCATATCATCACTGTCAATGCGGGCGAGGATGTCACAATGAAGATAATATCCTTTTCTCAACAAGGGCCTCGAGCTATATGCATTTTATCTGCAAACGGTGTAATCTCAAGTGTCACTCTCCGCCAGCCTGACTCCTCTGGAGGAACACTAACTTATGAGGGACGATTTGAAATACTTTCCCTGTCCGGCTCATTCATGCCTAGTGACAATGGAGCAACAAGAAGTAGATCTGGTGGAATGAGTGTTTCCTTAGCAAGTCCAGATGGGCGTGTAGTAGGCGGTGGAGTAGCTGGTCTATTAGTAGCTGCTAGTCCTGTTCAGGTTGTAGTAGGGAGTTTTCTATCAGGAAATCAACATGAACAGAAACCGAAAAAGCCAAAACATGATACTATCTCACCGGCCCCGCCAACTGCTGCCATTCCAATATCTTGTGTCGATCCTAAGTCCAACCTGTCACCTTCCAGTTCCTTTCGAGGCGATAACTGGTCGATGCTGCCAACTGATTCGAGAAATAAGTCAACTGATATCAATGTATCACTACCCAGTGCTTGA | 993 | 49.85 | MEGRDGGGASSGVTVVGSDAPSEYKIAPRTSDNPPQTGGSTTPPGTQSTSTPSASAQVSGQPPPPTAASSVPGKKKRGRPRKYGPDGSVSMALSPKPISLSVPPPVIDFSTEKKGKVRPASAVSKSKFEVDNLGDWVPCSLGANFTPHIITVNAGEDVTMKIISFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSDNGATRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLSGNQHEQKPKKPKHDTISPAPPTAAIPISCVDPKSNLSPSSSFRGDNWSMLPTDSRNKSTDINVSLPSA* | 331 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 2347041 | 2351649 | + | CsaV3_5G003650.1 | Csa05g00365 | 528752 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa05g00365 | 330 | MobiDBLite | consensus disorder prediction | 1 | 104 | - | - | |
Csa05g00365 | 330 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 147 | 260 | IPR005175 | - | |
Csa05g00365 | 330 | MobiDBLite | consensus disorder prediction | 264 | 330 | - | - | |
Csa05g00365 | 330 | MobiDBLite | consensus disorder prediction | 294 | 330 | - | - | |
Csa05g00365 | 330 | CDD | DUF296 | 146 | 237 | IPR005175 | - | |
Csa05g00365 | 330 | MobiDBLite | consensus disorder prediction | 29 | 64 | - | - | |
Csa05g00365 | 330 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 | 10 | 328 | - | - | |
Csa05g00365 | 330 | ProSiteProfiles | PPC domain profile profile. | 142 | 281 | IPR005175 | - | |
Csa05g00365 | 330 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 | 10 | 328 | IPR039605 | GO:0003680 | |
Csa05g00365 | 330 | Gene3D | - | 147 | 276 | - | - | |
Csa05g00365 | 330 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 144 | 265 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa05g00365 | Csa-Chr5:2347041 | Csa05g01080 | Csa-Chr5:10953266 | 1.49E-121 | dispersed | |
Csa05g01081 | Csa-Chr5:10963654 | Csa05g00365 | Csa-Chr5:2347041 | 1.12E-27 | dispersed | |
Csa03g00966 | Csa-Chr3:7872369 | Csa05g00365 | Csa-Chr5:2347041 | 5.64E-103 | wgd | |
Csa03g01634 | Csa-Chr3:12213375 | Csa05g00365 | Csa-Chr5:2347041 | 5.60E-84 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa05g00365 | - | - | csv:101210208 | 577.785 |