Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00366 ATGGCAGTCACTTCTATTCCTTGTCTTCAACCTCAAATCAAAGTTTCTCAGCCTTCTCTCAGCGTTGCAACCAAGGTTTACACGGGATTAAAGCCTCAATCAGCTAGTCCATTCGGAGGAGCAAAACCTAATATTACTGCTGAATTCTATGGAAAAGTTCACAAAAGTTTGCAGACCAGGACAAATAACAAAAAGGCTGCTCGTGCACAATTTCAGATGATGCCTATAGGGACTCCAAGGGTGCCTTACAAAACTCCTGGGGAGGGATTTTGGCAATGGGTTGATTTGTGGAATGCACTGTATCGAGAACGAGTTATCTTCATTGGGGATTACGTTGATGAAGAGTTTAGCAATCAAATTTTGGCAACAATGCTGTATCTTGACAGCGTTGAAGCTTCCAAGAAACTCTATATTTACATAAATGGCCCAGGTGGAGATCTAACTCCAACTTTGGCCCTCTACGATACAATGCAAAGTTTGAAGAGTCCTATAGCTACACATTGTATGGGTCAGGCCTATAATATGGCAGCCTTTCTTCTAGCAGCTGGAGAAAAGGGTAACCGCTCTGCTATGCCACTATCACGAATTGCTTTGCAATCCCCAGCCGGATCTGCTCGTGGCCGGGCTGATGATATTCAAAATGAAGCAAACCAGCTCTTAAAAATCAGGGATTATCTTTTTGATGAGCTTTCTAAGAAAACAGGCCAGCCTGTTGAAAAGATTCACAAGGACTTGAGTGGAACTAAGCGATTTAATGCGCAGCAAGCTCTTGAGTATGGACTTATTGACCGTATAGCTAGGCCAGCTCGCATTAAGGCTGATGCACCTCGCAAGGATGATGGAACAGGGCTTGGTTAG 858 43.82 MAVTSIPCLQPQIKVSQPSLSVATKVYTGLKPQSASPFGGAKPNITAEFYGKVHKSLQTRTNNKKAARAQFQMMPIGTPRVPYKTPGEGFWQWVDLWNALYRERVIFIGDYVDEEFSNQILATMLYLDSVEASKKLYIYINGPGGDLTPTLALYDTMQSLKSPIATHCMGQAYNMAAFLLAAGEKGNRSAMPLSRIALQSPAGSARGRADDIQNEANQLLKIRDYLFDELSKKTGQPVEKIHKDLSGTKRFNAQQALEYGLIDRIARPARIKADAPRKDDGTGLG* 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2356303 2360341 - CsaV3_5G003660.1 Csa05g00366 528753

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00366 285 CDD S14_ClpP_2 95 265 IPR001907 GO:0004176|GO:0004252|GO:0006508
Csa05g00366 285 Gene3D - 65 274 - -
Csa05g00366 285 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT-RELATED PROTEIN 2, CHLOROPLASTIC 9 279 - -
Csa05g00366 285 SUPERFAMILY ClpP/crotonase 91 268 IPR029045 -
Csa05g00366 285 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 77 269 IPR001907 GO:0004176|GO:0004252|GO:0006508
Csa05g00366 285 PRINTS Clp protease catalytic subunit P signature 95 110 IPR001907 GO:0004176|GO:0004252|GO:0006508
Csa05g00366 285 PRINTS Clp protease catalytic subunit P signature 135 155 IPR001907 GO:0004176|GO:0004252|GO:0006508
Csa05g00366 285 PRINTS Clp protease catalytic subunit P signature 166 183 IPR001907 GO:0004176|GO:0004252|GO:0006508
Csa05g00366 285 PRINTS Clp protease catalytic subunit P signature 187 206 IPR001907 GO:0004176|GO:0004252|GO:0006508
Csa05g00366 285 PRINTS Clp protease catalytic subunit P signature 244 263 IPR001907 GO:0004176|GO:0004252|GO:0006508
Csa05g00366 285 Pfam Clp protease 92 267 IPR023562 -
Csa05g00366 285 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 9 279 IPR023562 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00366 K01358 clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] - csv:101210460 572.778
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00127 Csa-Chr4:730156 Csa05g00366 Csa-Chr5:2356303 2.49E-39 dispersed
Csa05g00366 Csa-Chr5:2356303 Csa07g00689 Csa-Chr7:4936349 3.36E-22 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g469 . . Bda06g00053 . . Bpe07g00146 . . . Cmo16g01198 Cma02g01509 Cma15g01171 . Car15g01060 . Cpe14g00951 . . . . . . . . . . . . . . . Cone8ag0358 Cone12ag0350 . . . Csa05g00366 Chy09g01142 . . . . . . . . Bma12g00130 . . Cmo15g01233 . Cma16g01147 . Car16g01144 . . Bhi12g00364 . . . . . . . . . . . . . Lsi09g00370 . . Cme09g01674
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002594 3 2 3 4 3 1 2 1 1 1 1 1 1 2 2 3 1 4 1 1 2 2 2 1 2 2 2 4 3 1 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00366 Csa_Chr05 FPKM 97.844429 99.262222 33.670631 35.548882 29.209503 29.381659 30.543289 26.744282 25.421076 27.9133