Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00385 ATGGCACTCACCTCCAACTTCCTTCATTCTCTCGATTTCTTTGATCCCAATAACAAAACCCACTTTCTTCTCACTCTCTTTGCCGGTTTTCTACTTCTTCTCTATGTCAAATTTTCGCGGCGGCGCATCCACCTACCACCGGGTCCCCCCGGCGTTCCTCTCCTCGGAAATCTGCCGTTTCTAGACCCTGAACTTCACTCTTACTTTACGGAATTGGGCAGAAAGTACGGCCCAATTGTTAGGCTGCAATTGGGTGGAAAGATTGGTATAATCGTCAACTCATCATCCCTTGCACGTGAGGTGTTAAAGGATCACGATATCACTTTCGCCAATCACGACGTTCATGAGGCTGGTCGAGCCGCCACTTACGGCGGTTCTGACATAAGTTGGGCCCCCTACGGACCCGAATGGCGGATGTTGAGAAAAGTTTGTACGATCAAGATGCTTAGCAACGCCAGCTTGGACTCTGTATATGAGCTCCGCCGTAGAGAGGTTAGAAACACGGTGGCTCATTTGTACAGGCGAGCTGGGTCGGCGGTGAACGTGGGAGAGCAGGGGTTTTTGACGATTTTCAACGTGGTTACGAGCATGTTGTGGGGTGGTTCAGTGGAAAGCGATCAAAGCAGGGATAACATTGCGGCTGAGTTTAGAGAGACGATTTCAGAAATAACTAAGCTTCTTGGTCAGCCCAATGTCTCCGACTTCTTTCCGAGTTTAGCTCGTTTTGATCTTCAAGGAATTGAGAAGCAGATGGTTAAGCATGTCCTGAAATTGGACACCATTTTTGAAAAGATGATTGATGAACGAGTGAGAATGAAAGACGTTAATGAGAGTGTAAAGAAAAATGATTTCTTGCAGTTCTTATTAACTGTCAAAGACGAAGGCGATTCCAAAACTCCTCTCACCATGGTTCAACTTAAAGGTTTACTAATGGATATGGTGACTGGTGGAACAGACACATCCTCAAACACAGTTGAATTCGCAATGGGGGAAATGATGAAGAACCCAAAAATCCTAGAAAAAGCAAAGGAAGAACTTTGTGCTGTGGTTGGAGAACAGAGGATGGTAGAAGAATCCCATATACAGAGTTTGTCATATCTTAAAGCCGTAATGAAAGAAACGTTGCGTCTCCATCCAATTCTGCCGCTGCTAATTCCACACTGTCCCAGCGAGACCACCGTCGTCTCCAATTACACAATCCCAAAGGGCTCTAGAGTGTTTGTCAACGTCTGGGCAATCCAACGAGACCCTAATGAATGGGAAAATCCATTGGTGTTCGACCCAGAGAGGTTCTTGAATGGTAAATTCGATTTCAGTGGGAGTGATTTTCGTTATTTCCCATTCGGGTCCGGCAGAAGAAACTGTGCAGGGATAGCTATGGCGGAAAGAACTGTAATGTATTTGCTTGCTACGCTTTTGCACTCATTCGATTGGAAATTGGAAGAAGGTGAGAAGATTGAAGTAGAGGAGAAATTTGGGATTGTTTTAAAGATGAAGAAGCCTCTTGTTCTCATCCCAAGGCCTAGACTATTAGACCCTACTCTGTATGAGTAA 1554 45.37 MALTSNFLHSLDFFDPNNKTHFLLTLFAGFLLLLYVKFSRRRIHLPPGPPGVPLLGNLPFLDPELHSYFTELGRKYGPIVRLQLGGKIGIIVNSSSLAREVLKDHDITFANHDVHEAGRAATYGGSDISWAPYGPEWRMLRKVCTIKMLSNASLDSVYELRRREVRNTVAHLYRRAGSAVNVGEQGFLTIFNVVTSMLWGGSVESDQSRDNIAAEFRETISEITKLLGQPNVSDFFPSLARFDLQGIEKQMVKHVLKLDTIFEKMIDERVRMKDVNESVKKNDFLQFLLTVKDEGDSKTPLTMVQLKGLLMDMVTGGTDTSSNTVEFAMGEMMKNPKILEKAKEELCAVVGEQRMVEESHIQSLSYLKAVMKETLRLHPILPLLIPHCPSETTVVSNYTIPKGSRVFVNVWAIQRDPNEWENPLVFDPERFLNGKFDFSGSDFRYFPFGSGRRNCAGIAMAERTVMYLLATLLHSFDWKLEEGEKIEVEEKFGIVLKMKKPLVLIPRPRLLDPTLYE* 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2478995 2481338 + CsaV3_5G003850.1 Csa05g00385 528772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00385 517 PANTHER OS08G0547900 PROTEIN 16 517 - -
Csa05g00385 517 PRINTS E-class P450 group I signature 73 92 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00385 517 PRINTS E-class P450 group I signature 189 207 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00385 517 PRINTS E-class P450 group I signature 305 322 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00385 517 PRINTS E-class P450 group I signature 325 351 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00385 517 PRINTS E-class P450 group I signature 368 386 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00385 517 PRINTS E-class P450 group I signature 409 433 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00385 517 PRINTS E-class P450 group I signature 445 455 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00385 517 PRINTS E-class P450 group I signature 455 478 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00385 517 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 448 457 IPR017972 GO:0005506|GO:0016705
Csa05g00385 517 SUPERFAMILY Cytochrome P450 46 509 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00385 517 PRINTS P450 superfamily signature 316 333 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00385 517 PRINTS P450 superfamily signature 369 380 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00385 517 PRINTS P450 superfamily signature 446 455 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00385 517 PRINTS P450 superfamily signature 455 466 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00385 517 Pfam Cytochrome P450 46 502 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00385 517 Gene3D Cytochrome P450 35 505 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa05g00385 517 PANTHER CYTOCHROME P450, FAMILY 706, SUBFAMILY A, POLYPEPTIDE 3-RELATED 16 517 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00383 Csa-Chr5:2469249 Csa05g00385 Csa-Chr5:2478995 0 dispersed
Csa05g00385 Csa-Chr5:2478995 Csa03g02820 Csa-Chr3:27003519 4.26E-115 dispersed
Csa05g00384 Csa-Chr5:2473839 Csa05g00385 Csa-Chr5:2478995 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00385 - - csv:101213781 991.104