Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00395 ATGTCATCATCTTCTTGCTCATCTTCTTCTCCTACTTCGACTACAACTACTGCTACCACTACGACTACTACGACTACGACTACGTTATTGTCTCAACAACAACAGCTGCTGGACCACCACCTTCCTTCTTCACCTGAGCAGCTATGTTATGTCCATTGCAACATTTGTGACACTGTCCTTGCGGTTAGTGTTCCTTGTTGTAGTTTGTTTAAAACTGTGACAGTGAGATGTGGACATTGCACTAATCTGTTGCCAGTCAACATGCGTGGCCTTCTTTTGCCTTCACCTAATCAATTTCATCAGCTTGGCCATTCTTTCTTTTCTCCTTCTCATAACATTCTCGAAAATATGGCTACACCAAATTCTAATTATCTGATCAACCAATTTGGAGCTACTACTAACAATTTTGGTATGCCATCTCGAGGAGTTACTGATGAGCTCCCTAGGCCACCCGTCGTCAACAGACCTCCTGAGAAGAGACAGAGAGTGCCATCTGCATACAACCGTTTCATCAAGGATGAGATCCAACGCATTAAGTCTGTGAATCCCGATATATCCCATAGAGAAGCCTTCAGTGCCGCTGCTAAGAATTGGGCCCACTTTCCACACATTCACTTTGGTCTCATGCCCGACCAGACTGTGAAGAAGACAAATATCCGCCAGCAGGAACAAGGAGATGCTCAGAATGTTCTGATGAAAGACAATGGATTTTATGCCTCAGCCAATGTTGGTGTCTCCCATTTCTAA 747 44.18 MSSSSCSSSSPTSTTTTATTTTTTTTTTLLSQQQQLLDHHLPSSPEQLCYVHCNICDTVLAVSVPCCSLFKTVTVRCGHCTNLLPVNMRGLLLPSPNQFHQLGHSFFSPSHNILENMATPNSNYLINQFGATTNNFGMPSRGVTDELPRPPVVNRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHIHFGLMPDQTVKKTNIRQQEQGDAQNVLMKDNGFYASANVGVSHF* 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2561275 2563717 - CsaV3_5G003950.1 Csa05g00395 528782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00395 248 Pfam YABBY protein 44 208 IPR006780 GO:0007275
Csa05g00395 248 MobiDBLite consensus disorder prediction 142 161 - -
Csa05g00395 248 MobiDBLite consensus disorder prediction 1 22 - -
Csa05g00395 248 SUPERFAMILY HMG-box 152 201 IPR036910 -
Csa05g00395 248 Gene3D High mobility group box domain 152 227 IPR036910 -
Csa05g00395 248 PANTHER PROTEIN YABBY 6-RELATED 1 246 IPR006780 GO:0007275
Csa05g00395 248 PANTHER AXIAL REGULATOR YABBY 3 1 246 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g00304 Csa05g00395 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00197 Csa-Chr2:1351623 Csa05g00395 Csa-Chr5:2561275 1.38E-50 dispersed
Csa05g00395 Csa-Chr5:2561275 Csa06g02479 Csa-Chr6:22073762 3.53E-57 dispersed
Csa03g00304 Csa-Chr3:2578889 Csa05g00395 Csa-Chr5:2561275 2.67E-71 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31686 PF04690 YABBY 8.60E-71 CL0114 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00395 K25796 - csv:101214748 454.521