Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00396 ATGATGGCTTCTTTTGGTTACTTATCTCTCTTCCTCCTTCCATTTTGCCTGTTTCTTACCTTCTCATCCGCCGCAGATCCGTTCGCTTTCTTTGATTTTGAAGTCTCCTACATCACTGCTTCTCCTCTGGGTGTCCCTCAACAGGTTATTGCTATTAATGGGGAGTTTCCTGGTCCTACTGTCAATGTGACTACTAATAACAATGTTGTTATCAATGTCCGGAACAAGTTGGATGAGAGCATGCTCATGCATTGGTCTGGAGTTCAACAACGGCGAAGTTCGTGGCAAGATGGAGTTCCAGGAACAAATTGTCCAATTCCTCCCAAGTGGAACTGGACTTACCAGTTTCAAGTTAAGGATCAGATAGGGAGCTTCTTTTACTTTCCATCACTCCATTTCCAGAGAGCGTCGGGTGGATTTGGTGGCATTATTATTAACAATAGGGATGTAATCCCCATTCCTTTTTCAACCCCAGATGGAGACATTACAATTTTGATGGGCGATTGGTACACACGGAATCACACGGCTCTGAGAAAATCCCTTGATGACGGGAAGGATCTTGGAATGCCACATGGTGTTCTTATTAATGGCAAAGGCCCCTACAGATATAATGACACGCTAGTCCCTGATGGTATTGACCATGAAACAATTGAAGTTCATCCAGGAAAAACATATCGGATTCGTGTACACAATGTTGGAATATCTACTAGTCTGAATTTCAGGATCCAAAACCACAATCTTCTTTTAGCTGAAACAGAGGGGTCATATACAGTGCAACAGAATTATACTAGCTTAGACATACATGTAGGACAGTCGTATTCTTTTTTGGTCACCATGGATCAGAATGCGAGCACTGATTATTACATTGTAGCTAGTGCTCGGTTTGTCAACGAATCACTTTGGAAAAGAGTTACAGGAGTTGCTATCTTGCATTACTCTAATTCCAAAGGAAAGGCAGCTGGCCCTCTTCCAGAAGCACCAAAGGATGAGTTTGACAAAACTTTCTCAATGAACCAGGCAAGATCAATCAGATGGAATGTATCCGCTAGTGGTGCTCGTCCCAATCCACAAGGATCATTCAGATATGGTTCAATCAATGTAACTGATGTTTATGTCTTGAAAAATAAGCCTCCTGTATCGATCAATGGTAAAATGCGAACAACGTTAAGTGGAATCTCATTTGTTAATCCGTCTACACCAATCAGATTGGCTGACCAATTCAAGTTAAAGGGTGTTTATAAGCTCGACTTCCCCACTAGGCCGCTTACAGGACCACCAAAGGCAGAGACATCAGTGATTAATGGAACATATAGAGGGTTTATGGAGGTTATACTGCAGAATAATGACACCAAGATGCAGAGCTATCACATGAATGGATATGCCTTCTTTGTCGTGGGGATGGACTATGGCGAGTGGAGCGAGAATAGCAGAGGTACATACAATAAATGGGATGGAATCGCTCGCTCGACAATTCAGGTTTATCCTGGAGCATGGACTGCCATCTTGGTATCTCTTGATAACGTGGGAATATGGAACATCAGAACAGAGAATCTCGACTCGTGGTATCTTGGGCAAGAGACATATGTTCGGGTTGTCAATCCTGAAGCTACTAACAAAACAGAACTGCCTATGCCAGACAATGCTCTCTTTTGTGGCCAGCTTGGTAAATTACAAAAGCCTCAAGATATCTCTTCTGCAACTTCAATCACTGGCGATAGATTGAAGATGTTATTCACTCTGCTGATGATCATCTCCACTGTAATCTGTGCTTTGCAGTAA 1779 42.55 MMASFGYLSLFLLPFCLFLTFSSAADPFAFFDFEVSYITASPLGVPQQVIAINGEFPGPTVNVTTNNNVVINVRNKLDESMLMHWSGVQQRRSSWQDGVPGTNCPIPPKWNWTYQFQVKDQIGSFFYFPSLHFQRASGGFGGIIINNRDVIPIPFSTPDGDITILMGDWYTRNHTALRKSLDDGKDLGMPHGVLINGKGPYRYNDTLVPDGIDHETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQQNYTSLDIHVGQSYSFLVTMDQNASTDYYIVASARFVNESLWKRVTGVAILHYSNSKGKAAGPLPEAPKDEFDKTFSMNQARSIRWNVSASGARPNPQGSFRYGSINVTDVYVLKNKPPVSINGKMRTTLSGISFVNPSTPIRLADQFKLKGVYKLDFPTRPLTGPPKAETSVINGTYRGFMEVILQNNDTKMQSYHMNGYAFFVVGMDYGEWSENSRGTYNKWDGIARSTIQVYPGAWTAILVSLDNVGIWNIRTENLDSWYLGQETYVRVVNPEATNKTELPMPDNALFCGQLGKLQKPQDISSATSITGDRLKMLFTLLMIISTVICALQ* 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2572766 2577427 - CsaV3_5G003960.1 Csa05g00396 528783

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00396 592 SUPERFAMILY Cupredoxins 156 354 IPR008972 -
Csa05g00396 592 PANTHER MULTI-COPPER OXIDASE 13 563 IPR045087 -
Csa05g00396 592 Gene3D - 159 352 IPR008972 -
Csa05g00396 592 Pfam Multicopper oxidase 35 148 IPR011707 GO:0005507
Csa05g00396 592 Pfam Multicopper oxidase 401 534 IPR011706 GO:0005507|GO:0016491
Csa05g00396 592 Pfam Multicopper oxidase 161 314 IPR001117 -
Csa05g00396 592 PANTHER MONOCOPPER OXIDASE-LIKE PROTEIN SKS1 13 563 - -
Csa05g00396 592 Gene3D - 364 561 IPR008972 -
Csa05g00396 592 SUPERFAMILY Cupredoxins 23 174 IPR008972 -
Csa05g00396 592 Gene3D - 23 147 IPR008972 -
Csa05g00396 592 SUPERFAMILY Cupredoxins 381 553 IPR008972 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00396 - - - csv:101214991 1190.25
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa03g01616 Csa05g00396 CCT
Csa03g01616 Csa05g00396 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00396 Csa-Chr5:2572766 Csa05g00596 Csa-Chr5:3941356 0 dispersed
Csa07g01622 Csa-Chr7:16734641 Csa05g00396 Csa-Chr5:2572766 0 transposed
Csa03g01616 Csa-Chr3:12070053 Csa05g00396 Csa-Chr5:2572766 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g496 . . . . . . Bma07g01605 . . . . Cma15g01148 . Car15g01043 . . . . . . . . . . . . . . . . . . . . . . Csa05g00396 Chy09g01117 . . Blo19g00222 . Bda09g00089 Bpe08g01440 . . . . . Cmo15g01208 . . . . . Cpe13g00220 . . . . . . . Cla01g00369 Cam01g0389 Cec01g0382 Cco01g0400 Clacu01g0388 Cmu01g0369 Cre09g2141 Lsi09g00399 . . Cme09g01647
Vvi16g429 Blo06g01090 Blo15g00133 . . . Bpe07g00978 . . Cmo16g00204 . . Cma15g01148 . . Sed01g4020 Cpe05g00708 Cpe14g00160 Bhi01g01216 Tan01g0390 Cmetu06g0404 . Hepe07g0250 Mch10g0250 . Cla01g00369 Cam01g0389 Cec01g0382 Cco01g0400 Clacu01g0388 Cmu01g0369 Cre09g2141 . . . . Lsi05g01323 Csa05g00396 Chy09g01117 Cme06g00894 . . Bda06g00744 . . . . Bma12g01160 . . Cmo15g01208 Cma16g00190 . Car16g00167 . . Cpe13g00220 . . . . . . . Cla05g00795 Cam05g0872 Cec05g0877 Cco05g0882 Clacu05g0863 Cmu05g0819 Cre05g0905 . Csa03g01616 Chy06g00853 Cme09g01647
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000359 4 3 4 4 4 4 5 4 4 4 5 4 5 4 4 5 4 6 5 4 4 4 4 4 4 5 4 8 5 2 130
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00396 Csa_Chr05 FPKM 5.520523 3.630028 3.641207 3.154926 16.867939 14.445172 13.549796 7.799818 6.037731 5.921383