Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00403 ATGGCGTGGGTCAAATCCCTTCAGTGCAAATCCAGAGCCTTCGAAGACGTTTATCATCCATCTCCTAAAAATCTAATCCCCAGCGCCAGTTGCCGGAAAAGCGTTCAGAGTCTCAAAGACGTCGTTGAAACCACCAAATCGAAGCACAAAAAGCCCAAACACTCCCCGCCGGAGAAAAAACCGGTTTCCAAAAACCCAAGGCTCGCCAAATCGGAACCCGGCTCGACTCCCAGTTCCCGGCCCAGAATGAGCGTTTCGTCCCGTCCGTTAATCAGGGCCGACGATCTTATCTTCCCGGCGGTGTCGGAGTTGCCGGAGGGGCACCATTCCCGGAGTGTGGTTGAGATAATCTTCCACACGAGCTGGAGTCCGAAGGCGTTTACAGGGCGGGTCGAAATGATTTTCAAGGTCCAGAATGGGTCGAAGACGGTTGCTCGGTTTGAAGAGTATCGGGAAATGGTTAAGGCTAAGGCAGCGATGGGATGTCCCGCGGACGAGGAGAATGCGCGTTGTGTCGCAGATGGGAACGAGGTCATGAGGTTTCACTGCATGGGTCCCACTTCCGACTCGGCCAAATACGACGGATGCGGCGGCGCGTGGAGTTTCCCTGGAATGAGAGGGTTGTCATCGGCAGCAGCGATTTGTACGTTCGCCGGAAGTGGAGTGGCTCACGAGAACGCCGGCGGCGGGAGAGGGAGAAGAGCGATGTTGGTATGTCGGGTAATCGCAGGTCGGGTTTCAAAGCAAGTGGTGAAACCCGACCCGTATCTGGAAGGCCGAGTTGGACTGGACTCAGTGAGTGGGGATAATGGCGAGTTACTCGTGTTCGACTCGCGTGCGGTTCTTCCTTGTTTCCTCATCATCTACAAATTGTAA 876 54.91 MAWVKSLQCKSRAFEDVYHPSPKNLIPSASCRKSVQSLKDVVETTKSKHKKPKHSPPEKKPVSKNPRLAKSEPGSTPSSRPRMSVSSRPLIRADDLIFPAVSELPEGHHSRSVVEIIFHTSWSPKAFTGRVEMIFKVQNGSKTVARFEEYREMVKAKAAMGCPADEENARCVADGNEVMRFHCMGPTSDSAKYDGCGGAWSFPGMRGLSSAAAICTFAGSGVAHENAGGGRGRRAMLVCRVIAGRVSKQVVKPDPYLEGRVGLDSVSGDNGELLVFDSRAVLPCFLIIYKL* 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2635203 2637092 - CsaV3_5G004030.1 Csa05g00403 528790

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00403 291 MobiDBLite consensus disorder prediction 18 87 - -
Csa05g00403 291 Gene3D - 100 290 - -
Csa05g00403 291 SUPERFAMILY ADP-ribosylation 101 290 - -
Csa05g00403 291 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 2 290 - -
Csa05g00403 291 MobiDBLite consensus disorder prediction 27 41 - -
Csa05g00403 291 MobiDBLite consensus disorder prediction 69 85 - -
Csa05g00403 291 PANTHER SULFATED SURFACE-LIKE GLYCOPROTEIN 2 290 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00403 - - - csv:101215943 563.148
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00403 Csa-Chr5:2635203 Csa06g01436 Csa-Chr6:12247447 2.58E-35 dispersed
Csa05g00403 Csa-Chr5:2635203 Csa03g00581 Csa-Chr3:5040183 1.97E-30 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g510 . . . . . . . Bma14g00541 . . . Cma15g01142 . Car15g01038 . . . . . . . . . . . . . . . . . . . . . . Csa05g00403 Chy09g01110 . Blo03g00414 Blo19g00233 Bda07g00004 Bda09g00094 Bpe08g01435 Bpe11g00264 . . . . Cmo15g01203 . . . . . . Bhi12g00419 . . Lac11g2261 Hepe06g1658 . Lcy12g1806 Cla01g00376 Cam01g0395 Cec01g0387 Cco01g0407 Clacu01g0395 Cmu01g0376 Cre09g2135 Lsi09g00407 . . Cme09g01639
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004829 3 1 2 1 2 1 2 1 1 2 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00403 Csa_Chr05 FPKM 4.002005 3.824249 5.757477 6.753224 7.353319 7.573544 7.011885 12.916573 14.497428 13.488901