Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00408 ATGGCTTCCAAAGCTACCGTCTCTCTTGCATTTCTCCTTGCTCTCAATCTTGTTTTCTCCTCCTTCGTTTACGCTGAGGCTGACAAGAAGTGCCCAATAAACGCTCTTCAGCTCGGTGTTTGTGCAAAATTGCTCGGGGGTGTTGTCGATGTCGAGATCGGCAAGACTTCTTGCTGCCCTTTGATCGAGGGCCTAGTTGATCTTGATGCTGCTGTGTGCCTTTGCACTGCTGTTAAAGCCAAAGTGTTGGGACTGAATCTCAACATTCCCGTCGACCTCTCCTTGATTCTCAATGGCTGCAATAAGAAACTTGTTGAGGGCTTCACATGCTAA 333 48.05 MASKATVSLAFLLALNLVFSSFVYAEADKKCPINALQLGVCAKLLGGVVDVEIGKTSCCPLIEGLVDLDAAVCLCTAVKAKVLGLNLNIPVDLSLILNGCNKKLVEGFTC* 111
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2712454 2712786 + CsaV3_5G004080.1 Csa05g00408 528795

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00408 110 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 33 110 IPR036312 -
Csa05g00408 110 CDD HPS_like 30 110 IPR027923 -
Csa05g00408 110 Pfam Hydrophobic seed protein 31 110 IPR027923 -
Csa05g00408 110 Gene3D - 28 110 IPR036312 -
Csa05g00408 110 SMART aai_6 31 110 IPR016140 -
Csa05g00408 110 PANTHER - 3 110 - -
Csa05g00408 110 PANTHER HYPRP2 3 110 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00408 - - - csv:105435443 219.164
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa03g00295 Csa05g00408 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00406 Csa-Chr5:2696310 Csa05g00408 Csa-Chr5:2712454 3.57E-29 dispersed
Csa05g00408 Csa-Chr5:2712454 Csa05g00410 Csa-Chr5:2718419 1.65E-30 dispersed
Csa05g00411 Csa-Chr5:2723199 Csa05g00408 Csa-Chr5:2712454 9.62E-34 dispersed
Csa05g00407 Csa-Chr5:2702739 Csa05g00408 Csa-Chr5:2712454 3.59E-33 tandem
Csa05g00408 Csa-Chr5:2712454 Csa05g00409 Csa-Chr5:2715997 1.84E-72 tandem
Csa01g01775 Csa-Chr1:14571751 Csa05g00408 Csa-Chr5:2712454 3.99E-20 transposed
Csa04g02229 Csa-Chr4:22973563 Csa05g00408 Csa-Chr5:2712454 6.49E-25 transposed
Csa03g00286 Csa-Chr3:2321727 Csa05g00408 Csa-Chr5:2712454 3.85E-29 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g515 . . . . Bpe05g00586 . . . . . . Cma15g01138 . . Sed01g4008 . . Bhi11g00209 Tan01g2014 Cmetu09g0055 . . Mch10g1543 . Cla10g00273 Cam10g0282 Cec10g0290 Cco10g0287 Clacu10g0284 Cmu10g1124 Cre10g0532 . . Cone6ag0687 . Lsi07g01317 Csa05g00408 Chy09g01104 Cme06g02599 . . . . . . . . . . Cmo15g01197 . . . . . . Bhi12g00426 . . . . . Lcy12g1811 Cla01g00382 Cam01g0399 Cec01g0391 Cco01g0412 . . Cre09g2128 Lsi09g00412 Csa03g00295 . Cme09g01630
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000088 2 11 1 5 4 10 1 11 11 11 13 11 17 13 14 20 10 12 1 11 14 4 3 8 10 9 6 10 10 3 266
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00408 Csa_Chr05 FPKM 9.147027 8.847713 8.229952 9.52898 7.923001 8.377502 7.728705 20.869511 23.510138 22.649458