Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00417 ATGGGGAGCAGAACTAATTTCTACAAGAATCCTTCCATCTCCTACAAGAAGGACTTGCATCTCTCCTCCGCTCTTCAAAATCTGAGAGCGTATAACATTGCTACCGGCAATGCTCCTCCGACCGATGTTCAAGTTCAATCACCTCCTGTCCCTGTCGTGAAGAAGAATGAGAATCGGAAACGCCAACGGGAGCCAGAATTATGTGGTACTCAAATGTATGATGTTGGAAATAGTGACGGCCCTATGTCTCATCAAGATTACATTGAAAGGAGAAGAAAAGAAGCAAATAAATCTCAACCTTATGAGACACTTACGGAAGATGTTTTGGTAGCTTCCAGCTCGGGCTTGAACTTGGTCGACTATGAAAGTGATGAGAGCGTGTCTTCAGATGGTGCAGAAAAGCCAGATGTTCAAAATTCCAGTCTCTTGAATGATTACAAGGAAGTTGAAAGCAAAACTGAGCAACGTTTTGCTGTTGCGGGAGAACCTGTTTGTGTCGTATGCGGTAGATATGGAGAATACATATGTGATGAAACCAATGATGACATTTGCAGCATGGAGTGCAAATTCAAGCTTTTGGAAATTCTTAAACGAGGCGAGGAGTTCCCAAACTGTGAAGTGAAAGATGTTGCCTTACCAGAAAGTAAATATATCCTGCCTTCCCCAGAGTTTGGGGAGGACACCTGGGATTATAAGAACCATCGCTGGTCCAAAAAGAAATCCAATCTTTGTACTTATGAGTGCTGGAAATGTCAAAAACCGGGACACCTTGCTGAAGATTGTTTGGTGAAAACCAGTAACCAGGCAATGCAACAAATGACTTCCAATCCTGTACCTGGTGATCTCCTTGGACTATACAAAAGATGTTACCAGATGGGAAAGAATTTGTCAAATGCACTATGCAATGAATGCAGCTGTTCATATAGTTTGGCGACATGTCTTGATTGTAACACTGTTTACTGTGACAGTGCAGGTCATTTAAATGAGCATATCCACACACACCCAACTCATGGACTATATTACTCGCATAAACTCAAACGTCTTGTAAAATGCTGCAAATCAACATGCAGGGTGACTCAAATCAAGGATCTTCTAGTGTGTCATTACTGTTTTGATAAAGCTTTCGACAAGTTCTACGATATGTATACTGCATCATGGAACAGAGCTGGGCTTTCAATCATATCAGGTTCCATTTGTTGCGAAGATCATTTTGCATGGCATCGGATGAACTGTTTTAACGCAGATGTAGAGGACACTGCCTATATCATCAATAGGAAACCGAAAAAAGATAAGTTTGTTTCCATTAGTGACTTTATTTTTTGA 1323 41.19 MGSRTNFYKNPSISYKKDLHLSSALQNLRAYNIATGNAPPTDVQVQSPPVPVVKKNENRKRQREPELCGTQMYDVGNSDGPMSHQDYIERRRKEANKSQPYETLTEDVLVASSSGLNLVDYESDESVSSDGAEKPDVQNSSLLNDYKEVESKTEQRFAVAGEPVCVVCGRYGEYICDETNDDICSMECKFKLLEILKRGEEFPNCEVKDVALPESKYILPSPEFGEDTWDYKNHRWSKKKSNLCTYECWKCQKPGHLAEDCLVKTSNQAMQQMTSNPVPGDLLGLYKRCYQMGKNLSNALCNECSCSYSLATCLDCNTVYCDSAGHLNEHIHTHPTHGLYYSHKLKRLVKCCKSTCRVTQIKDLLVCHYCFDKAFDKFYDMYTASWNRAGLSIISGSICCEDHFAWHRMNCFNADVEDTAYIINRKPKKDKFVSISDFIF* 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2768574 2773783 + CsaV3_5G004170.1 Csa05g00417 528804

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00417 440 Gene3D - 145 202 - -
Csa05g00417 440 SUPERFAMILY Retrovirus zinc finger-like domains 233 264 IPR036875 GO:0003676|GO:0008270
Csa05g00417 440 ProSiteProfiles Zinc finger CCHC-type profile. 248 261 IPR001878 GO:0003676|GO:0008270
Csa05g00417 440 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 1 440 - -
Csa05g00417 440 SMART c2hcfinal6 247 263 IPR001878 GO:0003676|GO:0008270
Csa05g00417 440 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN ISOFORM 4 1 440 - -
Csa05g00417 440 Pfam HIT zinc finger 163 189 IPR007529 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00417 - - - csv:101212105 914.835
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00417 Csa-Chr5:2768574 Csa03g02008 Csa-Chr3:15936882 1.65E-13 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g529 . . . . . . Bma07g01597 . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0378 . . . Csa05g00417 Chy09g01092 . . Blo19g00254 . Bda09g00099 Bpe08g01430 . . . . . . . . . . . . Bhi12g00440 . . Lac11g2280 Hepe06g1668 . Lcy12g1825 Cla01g00393 Cam01g0410 . . Clacu01g0411 Cmu01g0392 Cre09g2118 Lsi09g00419 . . Cme09g01621
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010911 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00417 Csa_Chr05 FPKM 7.872385 8.170188 8.315762 8.651762 12.602794 10.658274 11.100918 45.694099 42.737514 45.14954