Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa05g00420 ATGGCAGCAGCAGCAGCAATTTCATCTTGTATTTTCTGCCAGAAAGCTTATAATTCTACCGCCAACAGCCTTCTTCATTTTGATGAGAGAGTTGTTGCTTTTGAAGATATAAACCCTTCTGCTGTCAGGCATTTCTTGGTAATTCCCAAGGAGCACATTCCCACAGTTAGGAATCTCCAGAGAAGAGCTGAAGATTACTCACTTGCAGTAAGTCACATGTTGGAGGTGGGGCAGACACTTCTATCCCAAGATTCACCTCAATTAAAGCACAGATTTGGCTTCCATCAGCCACCGATGAACAGTGTCAATCACTTACATCTCCATTGTTTTGCTCTTCCTTACACACCCAGGTGGAAGTTTGCAAAATATTTATCATTGGGATCGATCGGATTCATTGAAGCTGAGAAGTTGTTGGAGAAAATAAAGCCTTAG 432 42.13 MAAAAAISSCIFCQKAYNSTANSLLHFDERVVAFEDINPSAVRHFLVIPKEHIPTVRNLQRRAEDYSLAVSHMLEVGQTLLSQDSPQLKHRFGFHQPPMNSVNHLHLHCFALPYTPRWKFAKYLSLGSIGFIEAEKLLEKIKP* 144
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2782611 2787353 - CsaV3_5G004200.1 Csa05g00420 528807

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa05g00420 143 PANTHER APRATAXIN-RELATED 5 142 - -
Csa05g00420 143 PRINTS Histidine triad family signature 32 50 IPR001310 -
Csa05g00420 143 PRINTS Histidine triad family signature 100 110 IPR001310 -
Csa05g00420 143 PANTHER HISTIDINE TRIAD NUCLEOTIDE-BINDING PROTEIN 3 5 142 - -
Csa05g00420 143 Gene3D - 11 143 IPR036265 -
Csa05g00420 143 Pfam Scavenger mRNA decapping enzyme C-term binding 9 118 - -
Csa05g00420 143 ProSiteProfiles HIT domain profile. 11 120 IPR011146 GO:0003824
Csa05g00420 143 SUPERFAMILY HIT-like 7 131 IPR036265 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa05g00420 K22966 HINT4; sulfate adenylyltransferase (ADP) / adenylylsulfatase [EC:2.7.7.5 3.6.2.1] - csv:101205151 284.648
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g536 . . . . Bpe05g00579 . . . . . . Cma15g01124 . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00420 . . . . . . . . . . . . Cmo15g01184 . . . . . Cpe13g00232 Bhi12g00446 . . . . . . Cla01g00396 Cam01g0414 Cec01g0405 Cco01g0426 Clacu01g0415 Cmu01g0396 Cre09g2116 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009294 0 9 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa05g00420 Csa_Chr05 FPKM 17.387968 20.989492 10.798923 11.008558 29.365536 31.840799 30.516005 20.729149 19.623987 21.629822